Detailed information NTG0473386

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H5028_RS18525
• Genome accession: NZ_CP060013
• Coordinates: 3520372..3521232 (+)
• Length: 286 a.a.
• NCBI ID: WP_057078044.1
• Uniprot ID: A0A8I1ZA09
• Organism: Acinetobacter baumannii strain TP3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3515372..3526232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H5028_RS16600 (H5028_16585)	secG	3515977..3516306 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
H5028_RS16605 (H5028_16590)	tpiA	3516319..3517113 (-)	795	WP_029423716.1	triose-phosphate isomerase	-
H5028_RS16610 (H5028_16595)	pilB	3517404..3519116 (+)	1713	WP_001274991.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H5028_RS16615 (H5028_16600)	pilC	3519146..3520372 (+)	1227	WP_029423717.1	type II secretion system F family protein	Machinery gene
H5028_RS18525 (H5028_16605)	pilD	3520372..3521232 (+)	861	WP_057078044.1	prepilin peptidase	Machinery gene
H5028_RS16625 (H5028_16610)	coaE	3521234..3521830 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
H5028_RS16630 (H5028_16615)	-	3521827..3522741 (-)	915	WP_000075015.1	DMT family transporter	-
H5028_RS16635 (H5028_16620)	rlmB	3522777..3523526 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H5028_RS16640 (H5028_16625)	-	3523628..3523954 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
H5028_RS16645 (H5028_16630)	-	3524031..3525341 (-)	1311	WP_002055139.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32126.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=473386 H5028_RS18525 WP_057078044.1 3520372..3521232(+) (pilD) [Acinetobacter baumannii strain TP3]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMFFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIIYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=473386 H5028_RS18525 WP_057078044.1 3520372..3521232(+) (pilD) [Acinetobacter baumannii strain TP3]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGTTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTATCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGTATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	97.552	100	0.976
pilD	Acinetobacter nosocomialis M2	97.203	100	0.972
pilD	Vibrio cholerae strain A1552	53.875	94.755	0.51
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	46.591	92.308	0.43