Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   R2846_RS06960 Genome accession   NC_017452
Coordinates   1445459..1446142 (-) Length   227 a.a.
NCBI ID   WP_005659188.1    Uniprot ID   A0A0D0ILL6
Organism   Haemophilus influenzae R2846     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1440459..1451142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2846_RS06945 (R2846_1367) nrdR 1441264..1441713 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  R2846_RS06950 (R2846_1368) recC 1441768..1445133 (-) 3366 WP_014551001.1 exodeoxyribonuclease V subunit gamma -
  R2846_RS06955 (R2846_1369) comQ 1445179..1445466 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  R2846_RS06960 (R2846_1370) comP 1445459..1446142 (-) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  R2846_RS06965 (R2846_1371) comO 1446157..1446873 (-) 717 WP_014551003.1 type II secretion system protein J Machinery gene
  R2846_RS06970 (R2846_1372) comN 1446873..1447385 (-) 513 WP_014551004.1 type II secretion system protein Machinery gene
  R2846_RS06975 (R2846_1373) suhB 1447585..1448388 (+) 804 WP_014551005.1 inositol-1-monophosphatase -
  R2846_RS06980 (R2846_1374) nrfE 1448498..1450405 (+) 1908 WP_014551006.1 heme lyase NrfEFG subunit NrfE -
  R2846_RS06985 (R2846_1375) - 1450405..1450935 (+) 531 WP_014551007.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25496.28 Da        Isoelectric Point: 8.4375

>NTDB_id=47307 R2846_RS06960 WP_005659188.1 1445459..1446142(-) (comP) [Haemophilus influenzae R2846]
MTTQKGIITLTILIFISGLLTAFLLLDDNHLSFFRAQQNQRKHYVERTLQLQKMTEEKKQTACLDLPLNNDESVKQISIA
LEGAADAIQYFLWCERMSLFKKSPKKGDNQGALKDFVTGEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
SAILIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=47307 R2846_RS06960 WP_005659188.1 1445459..1446142(-) (comP) [Haemophilus influenzae R2846]
ATGACAACACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACTGCGTTTTTATTGTTGGA
TGACAACCATTTAAGTTTTTTTCGGGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACAGAGGAGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATGATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTGCCGCCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGTCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTTGTGACTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCACCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAAGTTGAAATTAATGGCACCGTA
TCTGCCATATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGCGCAGTGATTACCAGTGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0ILL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

96.035

100

0.96

Multiple sequence alignment