Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   R2846_RS06965 Genome accession   NC_017452
Coordinates   1446157..1446873 (-) Length   238 a.a.
NCBI ID   WP_014551003.1    Uniprot ID   -
Organism   Haemophilus influenzae R2846     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1441157..1451873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2846_RS06945 (R2846_1367) nrdR 1441264..1441713 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  R2846_RS06950 (R2846_1368) recC 1441768..1445133 (-) 3366 WP_014551001.1 exodeoxyribonuclease V subunit gamma -
  R2846_RS06955 (R2846_1369) comQ 1445179..1445466 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  R2846_RS06960 (R2846_1370) comP 1445459..1446142 (-) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  R2846_RS06965 (R2846_1371) comO 1446157..1446873 (-) 717 WP_014551003.1 type II secretion system protein J Machinery gene
  R2846_RS06970 (R2846_1372) comN 1446873..1447385 (-) 513 WP_014551004.1 type II secretion system protein Machinery gene
  R2846_RS06975 (R2846_1373) suhB 1447585..1448388 (+) 804 WP_014551005.1 inositol-1-monophosphatase -
  R2846_RS06980 (R2846_1374) nrfE 1448498..1450405 (+) 1908 WP_014551006.1 heme lyase NrfEFG subunit NrfE -
  R2846_RS06985 (R2846_1375) - 1450405..1450935 (+) 531 WP_014551007.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26766.10 Da        Isoelectric Point: 9.5507

>NTDB_id=47308 R2846_RS06965 WP_014551003.1 1446157..1446873(-) (comO) [Haemophilus influenzae R2846]
MMKTLLKGQTLLALMISLTLSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=47308 R2846_RS06965 WP_014551003.1 1446157..1446873(-) (comO) [Haemophilus influenzae R2846]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGACTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTTATTAGCCAAGAAGATAATGCACCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGCTGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

98.319

100

0.983

Multiple sequence alignment