Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   R2846_RS06955 Genome accession   NC_017452
Coordinates   1445179..1445466 (-) Length   95 a.a.
NCBI ID   WP_005655928.1    Uniprot ID   A0A0H3PGC3
Organism   Haemophilus influenzae R2846     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1440179..1450466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2846_RS06945 (R2846_1367) nrdR 1441264..1441713 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  R2846_RS06950 (R2846_1368) recC 1441768..1445133 (-) 3366 WP_014551001.1 exodeoxyribonuclease V subunit gamma -
  R2846_RS06955 (R2846_1369) comQ 1445179..1445466 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  R2846_RS06960 (R2846_1370) comP 1445459..1446142 (-) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  R2846_RS06965 (R2846_1371) comO 1446157..1446873 (-) 717 WP_014551003.1 type II secretion system protein J Machinery gene
  R2846_RS06970 (R2846_1372) comN 1446873..1447385 (-) 513 WP_014551004.1 type II secretion system protein Machinery gene
  R2846_RS06975 (R2846_1373) suhB 1447585..1448388 (+) 804 WP_014551005.1 inositol-1-monophosphatase -
  R2846_RS06980 (R2846_1374) nrfE 1448498..1450405 (+) 1908 WP_014551006.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11033.81 Da        Isoelectric Point: 9.2205

>NTDB_id=47306 R2846_RS06955 WP_005655928.1 1445179..1445466(-) (comQ) [Haemophilus influenzae R2846]
MNKGISFITLLFSLTLFSVLFLVFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=47306 R2846_RS06955 WP_005655928.1 1445179..1445466(-) (comQ) [Haemophilus influenzae R2846]
ATGAATAAAGGAATATCTTTTATTACATTGTTATTTTCTTTAACTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTGAAAACTTATCAAGATTTTCAGGCAATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PGC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

95.789

100

0.958

Multiple sequence alignment