Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H4995_RS08195 Genome accession   NZ_CP059972
Coordinates   1560209..1560982 (+) Length   257 a.a.
NCBI ID   WP_002918419.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C220     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1555209..1565982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4995_RS08180 (H4995_08180) - 1556058..1557992 (-) 1935 WP_182101490.1 ribonuclease R family protein -
  H4995_RS08185 (H4995_08185) ilvC 1558111..1559133 (+) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  H4995_RS08190 (H4995_08190) - 1559137..1560219 (+) 1083 WP_146314506.1 divergent polysaccharide deacetylase family protein -
  H4995_RS08195 (H4995_08195) dprA 1560209..1560982 (+) 774 WP_002918419.1 DNA-processing protein DprA Machinery gene
  H4995_RS08200 (H4995_08200) ruvX 1560979..1561362 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX -
  H4995_RS08205 (H4995_08205) - 1561391..1562230 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  H4995_RS08210 (H4995_08210) msrA 1562406..1562903 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H4995_RS08215 (H4995_08215) ppa 1562945..1563463 (-) 519 WP_002867724.1 inorganic diphosphatase -
  H4995_RS08220 (H4995_08220) adk 1563473..1564051 (-) 579 WP_002859580.1 adenylate kinase -
  H4995_RS08225 (H4995_08225) aspS 1564048..1565799 (-) 1752 WP_182101491.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28919.74 Da        Isoelectric Point: 7.7211

>NTDB_id=472984 H4995_RS08195 WP_002918419.1 1560209..1560982(+) (dprA) [Campylobacter jejuni strain C220]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNRVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=472984 H4995_RS08195 WP_002918419.1 1560209..1560982(+) (dprA) [Campylobacter jejuni strain C220]
ATGGCAAGTGAAATTTTGCCTGATGAGTTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATCGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459