Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H4990_RS07440 Genome accession   NZ_CP059969
Coordinates   1405722..1406495 (-) Length   257 a.a.
NCBI ID   WP_182579315.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C109     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1400722..1411495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4990_RS07420 (H4990_07420) - 1401247..1402860 (+) 1614 WP_002868246.1 hypothetical protein -
  H4990_RS07425 (H4990_07425) - 1402883..1404490 (+) 1608 WP_182579314.1 hypothetical protein -
  H4990_RS07430 (H4990_07430) - 1404474..1405313 (-) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  H4990_RS07435 (H4990_07435) ruvX 1405342..1405725 (-) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  H4990_RS07440 (H4990_07440) dprA 1405722..1406495 (-) 774 WP_182579315.1 DNA-processing protein DprA Machinery gene
  H4990_RS07445 (H4990_07445) - 1406485..1407567 (-) 1083 WP_032581039.1 divergent polysaccharide deacetylase family protein -
  H4990_RS07450 (H4990_07450) ilvC 1407571..1408593 (-) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  H4990_RS07455 (H4990_07455) - 1408712..1410646 (+) 1935 WP_052784541.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28820.56 Da        Isoelectric Point: 6.4874

>NTDB_id=472906 H4990_RS07440 WP_182579315.1 1405722..1406495(-) (dprA) [Campylobacter jejuni strain C109]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGADITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=472906 H4990_RS07440 WP_182579315.1 1405722..1406495(-) (dprA) [Campylobacter jejuni strain C109]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGCGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455