Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H4991_RS01175 Genome accession   NZ_CP059968
Coordinates   227327..227638 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain C197     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 222327..232638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4991_RS01155 (H4991_01155) ctsE 223196..224755 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  H4991_RS01160 (H4991_01160) ctsX 224745..225332 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  H4991_RS01165 (H4991_01165) ctsP 225336..225944 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H4991_RS01170 (H4991_01170) ctsD 225937..227349 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H4991_RS01175 (H4991_01175) ctsR 227327..227638 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  H4991_RS01180 (H4991_01180) nifJ 227662..231081 (-) 3420 Protein_228 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H4991_RS01190 (H4991_01190) - 231665..232075 (-) 411 WP_002783915.1 hypothetical protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=472862 H4991_RS01175 WP_002855438.1 227327..227638(-) (ctsR) [Campylobacter jejuni strain C197]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=472862 H4991_RS01175 WP_002855438.1 227327..227638(-) (ctsR) [Campylobacter jejuni strain C197]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGGCATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1