Detailed information NTG0472861

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: H4991_RS01170
• Genome accession: NZ_CP059968
• Coordinates: 225937..227349 (-)
• Length: 470 a.a.
• NCBI ID: WP_002855316.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain C197
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 220937..232349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4991_RS01145 (H4991_01145)	-	221261..222025 (+)	765	WP_002855821.1	TSUP family transporter	-
H4991_RS01150 (H4991_01150)	ctsF	222018..223199 (-)	1182	WP_002868229.1	type II secretion system F family protein	Machinery gene
H4991_RS01155 (H4991_01155)	ctsE	223196..224755 (-)	1560	WP_002858863.1	GspE/PulE family protein	Machinery gene
H4991_RS01160 (H4991_01160)	ctsX	224745..225332 (-)	588	WP_002858864.1	hypothetical protein	Machinery gene
H4991_RS01165 (H4991_01165)	ctsP	225336..225944 (-)	609	WP_002851464.1	ATP-binding protein	Machinery gene
H4991_RS01170 (H4991_01170)	ctsD	225937..227349 (-)	1413	WP_002855316.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
H4991_RS01175 (H4991_01175)	ctsR	227327..227638 (-)	312	WP_002855438.1	hypothetical protein	Machinery gene
H4991_RS01180 (H4991_01180)	nifJ	227662..231081 (-)	3420	Protein_228	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
H4991_RS01190 (H4991_01190)	-	231665..232075 (-)	411	WP_002783915.1	hypothetical protein	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53106.71 Da
• Isoelectric Point: 6.6184

>NTDB_id=472861 H4991_RS01170 WP_002855316.1 225937..227349(-) (ctsD) [Campylobacter jejuni strain C197]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKIPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=472861 H4991_RS01170 WP_002855316.1 225937..227349(-) (ctsD) [Campylobacter jejuni strain C197]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAATTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	99.787	100	0.998