Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H4992_RS02610 Genome accession   NZ_CP059967
Coordinates   482353..483126 (+) Length   257 a.a.
NCBI ID   WP_002874287.1    Uniprot ID   Q0PAN4
Organism   Campylobacter jejuni strain C201     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 477353..488126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4992_RS02595 (H4992_02595) - 478202..480136 (-) 1935 WP_182577096.1 ribonuclease R family protein -
  H4992_RS02600 (H4992_02600) ilvC 480255..481277 (+) 1023 WP_002873648.1 ketol-acid reductoisomerase -
  H4992_RS02605 (H4992_02605) - 481281..482363 (+) 1083 WP_182577095.1 divergent polysaccharide deacetylase family protein -
  H4992_RS02610 (H4992_02610) dprA 482353..483126 (+) 774 WP_002874287.1 DNA-processing protein DprA Machinery gene
  H4992_RS02615 (H4992_02615) ruvX 483123..483506 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  H4992_RS02620 (H4992_02620) - 483535..484374 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  H4992_RS02625 (H4992_02625) msrA 484550..485047 (-) 498 WP_002874288.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H4992_RS02630 (H4992_02630) ppa 485088..485606 (-) 519 WP_002852138.1 inorganic diphosphatase -
  H4992_RS02635 (H4992_02635) adk 485616..486194 (-) 579 WP_002858481.1 adenylate kinase -
  H4992_RS02640 (H4992_02640) aspS 486191..487942 (-) 1752 WP_052822853.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28774.64 Da        Isoelectric Point: 7.6510

>NTDB_id=472836 H4992_RS02610 WP_002874287.1 482353..483126(+) (dprA) [Campylobacter jejuni strain C201]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=472836 H4992_RS02610 WP_002874287.1 482353..483126(+) (dprA) [Campylobacter jejuni strain C201]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTGCACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGCATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTGC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1
  dprA Helicobacter pylori 26695

48.75

93.385

0.455