Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   H4993_RS03995 Genome accession   NZ_CP059966
Coordinates   768041..768478 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain C203     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 763041..773478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4993_RS03970 (H4993_03970) tsaD 763387..764394 (+) 1008 WP_002868457.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H4993_RS03975 (H4993_03975) ctsG 764395..764910 (+) 516 WP_002868456.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4993_RS08735 - 764910..766196 (+) 1287 Protein_779 DUF2920 family protein -
  H4993_RS03990 (H4993_03990) priA 766206..768059 (-) 1854 WP_002860009.1 primosomal protein N' -
  H4993_RS03995 (H4993_03995) Cj0683 768041..768478 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4993_RS04000 (H4993_04000) - 768475..768717 (-) 243 WP_002854947.1 hypothetical protein -
  H4993_RS04005 (H4993_04005) - 768707..768937 (-) 231 WP_002852327.1 hypothetical protein -
  H4993_RS04010 (H4993_04010) uvrB 769091..771064 (+) 1974 WP_182577174.1 excinuclease ABC subunit UvrB -
  H4993_RS08920 - 771059..771190 (-) 132 WP_256379349.1 hypothetical protein -
  H4993_RS08740 - 771177..771809 (-) 633 WP_237928838.1 DUF4118 domain-containing protein -
  H4993_RS08745 - 771833..772984 (-) 1152 WP_237928839.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=472814 H4993_RS03995 WP_002852324.1 768041..768478(-) (Cj0683) [Campylobacter jejuni strain C203]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=472814 H4993_RS03995 WP_002852324.1 768041..768478(-) (Cj0683) [Campylobacter jejuni strain C203]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1