Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H4993_RS03975 Genome accession   NZ_CP059966
Coordinates   764395..764910 (+) Length   171 a.a.
NCBI ID   WP_002868456.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C203     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 759395..769910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4993_RS03950 (H4993_03950) - 759855..760193 (+) 339 WP_002852397.1 hypothetical protein -
  H4993_RS03955 (H4993_03955) cdsA 760202..760927 (+) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  H4993_RS03960 (H4993_03960) dxr 760924..761994 (+) 1071 WP_002868459.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H4993_RS03965 (H4993_03965) - 761996..763390 (+) 1395 WP_052798977.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H4993_RS03970 (H4993_03970) tsaD 763387..764394 (+) 1008 WP_002868457.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H4993_RS03975 (H4993_03975) ctsG 764395..764910 (+) 516 WP_002868456.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4993_RS08735 - 764910..766196 (+) 1287 Protein_779 DUF2920 family protein -
  H4993_RS03990 (H4993_03990) priA 766206..768059 (-) 1854 WP_002860009.1 primosomal protein N' -
  H4993_RS03995 (H4993_03995) Cj0683 768041..768478 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4993_RS04000 (H4993_04000) - 768475..768717 (-) 243 WP_002854947.1 hypothetical protein -
  H4993_RS04005 (H4993_04005) - 768707..768937 (-) 231 WP_002852327.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18704.64 Da        Isoelectric Point: 6.4682

>NTDB_id=472813 H4993_RS03975 WP_002868456.1 764395..764910(+) (ctsG) [Campylobacter jejuni strain C203]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGILSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=472813 H4993_RS03975 WP_002868456.1 764395..764910(+) (ctsG) [Campylobacter jejuni strain C203]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTTAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936