Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   H4993_RS00935 Genome accession   NZ_CP059966
Coordinates   186167..186817 (+) Length   216 a.a.
NCBI ID   WP_002852117.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni strain C203     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 181167..191817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4993_RS00915 (H4993_00915) - 182041..183483 (-) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -
  H4993_RS00920 (H4993_00920) fbaA 183578..184642 (-) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  H4993_RS00925 (H4993_00925) peb4 184642..185463 (-) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  H4993_RS00930 (H4993_00930) nth 185544..186170 (+) 627 WP_002868092.1 endonuclease III -
  H4993_RS00935 (H4993_00935) CJE0566 186167..186817 (+) 651 WP_002852117.1 DNA/RNA non-specific endonuclease Regulator
  H4993_RS00940 (H4993_00940) - 186828..187460 (+) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  H4993_RS00945 (H4993_00945) - 187518..187952 (+) 435 WP_002868091.1 EexN family lipoprotein -
  H4993_RS00950 (H4993_00950) - 187949..188170 (+) 222 WP_002859102.1 EexN family lipoprotein -
  H4993_RS00955 (H4993_00955) cmoA 188160..188870 (-) 711 WP_079254426.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  H4993_RS00960 (H4993_00960) ribF 188857..189711 (-) 855 WP_002852206.1 bifunctional riboflavin kinase/FAD synthetase -
  H4993_RS00965 (H4993_00965) tlyA 189677..190438 (-) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  H4993_RS00970 (H4993_00970) - 190435..191439 (-) 1005 WP_079254730.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=472804 H4993_RS00935 WP_002852117.1 186167..186817(+) (CJE0566) [Campylobacter jejuni strain C203]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=472804 H4993_RS00935 WP_002852117.1 186167..186817(+) (CJE0566) [Campylobacter jejuni strain C203]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATATATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63