Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   I6K26_RS10430 Genome accession   NZ_CP070066
Coordinates   2204498..2205154 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain FDAARGOS_1296     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2199498..2210154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K26_RS10400 (I6K26_10400) dcyD 2200377..2201363 (+) 987 WP_001128237.1 D-cysteine desulfhydrase -
  I6K26_RS10405 (I6K26_10405) tcyL 2201378..2202046 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  I6K26_RS10410 (I6K26_10410) tcyN 2202043..2202795 (+) 753 WP_001273001.1 L-cystine ABC transporter ATP-binding protein TcyN -
  I6K26_RS10415 (I6K26_10415) sdiA 2203025..2203747 (+) 723 WP_001154255.1 transcriptional regulator SdiA -
  I6K26_RS10420 (I6K26_10420) yecF 2203815..2204039 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  I6K26_RS10425 (I6K26_10425) yecU 2204026..2204202 (-) 177 WP_001307856.1 protein YecU -
  I6K26_RS10430 (I6K26_10430) letA 2204498..2205154 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  I6K26_RS10435 (I6K26_10435) uvrC 2205151..2206983 (+) 1833 WP_204694650.1 excinuclease ABC subunit UvrC Machinery gene
  I6K26_RS10440 (I6K26_10440) pgsA 2207040..2207588 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6K26_RS10460 (I6K26_10460) yecA 2208237..2208902 (+) 666 WP_000847882.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=472382 I6K26_RS10430 WP_000611328.1 2204498..2205154(+) (letA) [Escherichia coli strain FDAARGOS_1296]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=472382 I6K26_RS10430 WP_000611328.1 2204498..2205154(+) (letA) [Escherichia coli strain FDAARGOS_1296]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482