Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FN3523_RS08720 Genome accession   NC_017449
Coordinates   1810624..1812132 (-) Length   502 a.a.
NCBI ID   WP_014549009.1    Uniprot ID   F4BHU1
Organism   Francisella hispaniensis     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1805624..1817132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FN3523_RS08700 (FN3523_1729) nusA 1807373..1808842 (-) 1470 WP_014549006.1 transcription termination factor NusA -
  FN3523_RS08705 (FN3523_1730) rimP 1808860..1809312 (-) 453 WP_014549007.1 ribosome maturation factor RimP -
  FN3523_RS08715 (FN3523_1731) hemE 1809535..1810569 (-) 1035 WP_014549008.1 uroporphyrinogen decarboxylase -
  FN3523_RS08720 (FN3523_1732) comM 1810624..1812132 (-) 1509 WP_014549009.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FN3523_RS08725 (FN3523_1733) - 1812134..1812328 (-) 195 WP_014549010.1 accessory factor UbiK family protein -
  FN3523_RS08730 (FN3523_1734) - 1812408..1813859 (-) 1452 WP_014549011.1 NADH-quinone oxidoreductase subunit N -
  FN3523_RS08735 (FN3523_1735) - 1813875..1815464 (-) 1590 WP_014549012.1 complex I subunit 4 family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55109.66 Da        Isoelectric Point: 8.8206

>NTDB_id=47234 FN3523_RS08720 WP_014549009.1 1810624..1812132(-) (comM) [Francisella hispaniensis]
MSLAVLKSRAQLGIEAPLVSIEVHLSNGLPGLSIVGLPEAAVKESKDRVRSAIINSGFSFPNKRITINLAPADLPKSSGR
FDLPIALGILYASGQVNIIKDIDEYEFAGELSLSGELRKISSAIPMAIKCVEENKKLIVPIQNDKEIGLVETVQAYSFDS
LNSVIEFLSGTEKEPIKPNIEVDFSKLYQDLEDVKGQYQAKRALEIAAAGGHNILLVGPPGTGKTMLASRLNSILPTLDK
KEALSSAMIASIKGESGIAESFYKRPFRHPHHTSSGVSLVGGGSNPMPGEISLAHNGVLFLDELPEFDRKVLEVLREPLE
TGSVNISRARCQVEYPANFQLIAAMNPCPCGYLGSQFKECTDSIQAIRRYQSKLSGPLLDRIDLHVEVLELAKEDLTNQQ
LRGEKSSIVRERVKRARDRQVSRQGKINAMLSSKELDKVCNLNDETKKMLTLAIEKLGLSARGYYKILKVARTIADLNST
KNIDKVAIQEAISYRKMDKFIK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=47234 FN3523_RS08720 WP_014549009.1 1810624..1812132(-) (comM) [Francisella hispaniensis]
ATGTCTTTAGCTGTTTTAAAGAGTCGAGCCCAACTTGGTATAGAGGCTCCTTTAGTTTCTATTGAAGTTCATCTTTCAAA
TGGTTTGCCAGGACTATCTATAGTTGGTCTGCCAGAGGCAGCTGTTAAAGAGAGTAAAGATCGTGTAAGAAGTGCGATCA
TTAATTCAGGCTTTAGCTTTCCTAATAAGCGTATAACAATCAACCTTGCACCAGCTGATTTACCCAAAAGTAGCGGTAGA
TTTGATTTGCCGATAGCATTAGGTATCTTGTATGCTTCTGGACAAGTAAATATTATCAAAGATATCGATGAGTATGAGTT
TGCTGGTGAATTATCTTTAAGTGGTGAGTTGAGGAAAATATCTAGTGCTATACCAATGGCTATTAAGTGTGTTGAGGAAA
ATAAAAAACTTATTGTGCCAATACAAAATGATAAAGAGATTGGTTTAGTTGAGACAGTTCAAGCCTATAGCTTTGATAGC
TTAAATAGCGTTATAGAGTTTTTATCAGGAACTGAAAAAGAGCCAATAAAGCCAAATATAGAGGTTGACTTTAGTAAGCT
ATACCAAGATTTAGAAGATGTCAAAGGACAATATCAAGCCAAAAGAGCATTAGAGATTGCTGCGGCTGGTGGTCACAATA
TCCTTTTAGTAGGTCCTCCTGGTACCGGCAAGACAATGTTGGCAAGTAGACTAAATTCAATTTTACCAACGTTAGATAAG
AAAGAAGCGCTCTCATCAGCAATGATTGCATCAATCAAAGGAGAATCGGGAATAGCTGAAAGCTTTTATAAAAGACCATT
TCGTCATCCACATCATACCTCATCAGGAGTGTCCTTGGTTGGTGGTGGTAGTAATCCAATGCCTGGTGAGATTTCTTTAG
CACATAATGGTGTGCTTTTTCTTGATGAGTTACCAGAATTTGATCGTAAGGTTTTAGAAGTATTGCGTGAGCCTTTAGAG
ACAGGAAGTGTCAATATTTCTAGAGCTAGGTGTCAAGTTGAATATCCAGCTAACTTTCAGTTAATAGCAGCAATGAATCC
ATGTCCATGTGGATATTTAGGCTCACAATTTAAAGAGTGTACTGACTCAATCCAAGCGATTAGAAGATATCAGAGTAAGT
TATCTGGGCCACTTCTAGATAGGATAGATCTTCATGTTGAAGTTCTTGAGCTTGCAAAAGAGGATCTAACAAATCAGCAG
TTAAGAGGCGAGAAAAGCAGCATAGTTAGAGAGCGAGTTAAAAGGGCTCGAGATAGACAAGTCTCTCGACAGGGTAAGAT
TAATGCAATGCTATCTAGTAAAGAGCTTGATAAGGTTTGTAATCTTAATGATGAAACAAAAAAAATGCTTACGCTAGCTA
TAGAAAAGCTTGGACTATCAGCAAGAGGGTATTATAAAATACTCAAAGTTGCTAGAACCATAGCAGATCTTAATAGTACT
AAAAATATTGATAAAGTAGCTATTCAAGAAGCTATTAGTTATAGAAAAATGGATAAGTTTATCAAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4BHU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.778

100

0.53
  comM Haemophilus influenzae Rd KW20

51.969

100

0.526
  comM Glaesserella parasuis strain SC1401

52.071

100

0.526
  comM Vibrio cholerae strain A1552

52.183

100

0.524
  comM Legionella pneumophila str. Paris

51.004

99.203

0.506
  comM Legionella pneumophila strain ERS1305867

51.004

99.203

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49.197

99.203

0.488

Multiple sequence alignment