Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6L02_RS18535 Genome accession   NZ_CP070063
Coordinates   3909621..3910358 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_1372     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3904621..3915358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L02_RS18520 (I6L02_18520) clpC 3905075..3907648 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  I6L02_RS18525 (I6L02_18525) yfiH 3907778..3908509 (-) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  I6L02_RS18530 (I6L02_18530) rluD 3908506..3909486 (-) 981 WP_000079118.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6L02_RS18535 (I6L02_18535) comL 3909621..3910358 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6L02_RS18540 (I6L02_18540) raiA 3910628..3910969 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6L02_RS18545 (I6L02_18545) pheL 3911073..3911120 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I6L02_RS18550 (I6L02_18550) pheA 3911219..3912379 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6L02_RS18555 (I6L02_18555) tyrA 3912422..3913543 (-) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6L02_RS18560 (I6L02_18560) aroF 3913554..3914624 (-) 1071 WP_001168027.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I6L02_RS18565 (I6L02_18565) yfiL 3914834..3915199 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=472316 I6L02_RS18535 WP_000197686.1 3909621..3910358(+) (comL) [Escherichia coli strain FDAARGOS_1372]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=472316 I6L02_RS18535 WP_000197686.1 3909621..3910358(+) (comL) [Escherichia coli strain FDAARGOS_1372]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376