Detailed information NTG0472320

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6L02_RS19345
• Genome accession: NZ_CP070063
• Coordinates: 4047213..4048205 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1372
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4042213..4053205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L02_RS19325 (I6L02_19325)	ygbM	4042851..4043627 (+)	777	WP_001136912.1	HPr family phosphocarrier protein	-
I6L02_RS19330 (I6L02_19330)	ygbN	4043716..4045080 (+)	1365	WP_000104433.1	GntP family transporter	-
I6L02_RS19335 (I6L02_19335)	-	4045223..4046266 (-)	1044	WP_001161584.1	MBL fold metallo-hydrolase	-
I6L02_RS19340 (I6L02_19340)	-	4046491..4047042 (+)	552	WP_001179442.1	flavodoxin family protein	-
I6L02_RS19345 (I6L02_19345)	rpoS	4047213..4048205 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6L02_RS19350 (I6L02_19350)	nlpD	4048268..4049362 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I6L02_RS19355 (I6L02_19355)	pcm	4049547..4050173 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6L02_RS19360 (I6L02_19360)	surE	4050167..4050928 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6L02_RS19365 (I6L02_19365)	truD	4050909..4051958 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
I6L02_RS19370 (I6L02_19370)	ispF	4051955..4052434 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6L02_RS19375 (I6L02_19375)	ispD	4052434..4053144 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=472320 I6L02_RS19345 WP_000081550.1 4047213..4048205(-) (rpoS) [Escherichia coli strain FDAARGOS_1372]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=472320 I6L02_RS19345 WP_000081550.1 4047213..4048205(-) (rpoS) [Escherichia coli strain FDAARGOS_1372]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715