Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6K20_RS11485 Genome accession   NZ_CP070048
Coordinates   2354237..2354974 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_1290     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2349237..2359974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K20_RS11470 (I6K20_11475) clpC 2349691..2352264 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  I6K20_RS11475 (I6K20_11480) yfiH 2352394..2353125 (-) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  I6K20_RS11480 (I6K20_11485) rluD 2353122..2354102 (-) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6K20_RS11485 (I6K20_11490) comL 2354237..2354974 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6K20_RS11490 (I6K20_11495) raiA 2355245..2355586 (+) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  I6K20_RS11495 (I6K20_11500) pheL 2355690..2355737 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I6K20_RS11500 (I6K20_11505) pheA 2355836..2356996 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6K20_RS11505 (I6K20_11510) tyrA 2357039..2358160 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6K20_RS11510 (I6K20_11515) aroF 2358171..2359241 (-) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I6K20_RS11515 (I6K20_11520) yfiL 2359450..2359815 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=472195 I6K20_RS11485 WP_000197686.1 2354237..2354974(+) (comL) [Escherichia coli strain FDAARGOS_1290]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=472195 I6K20_RS11485 WP_000197686.1 2354237..2354974(+) (comL) [Escherichia coli strain FDAARGOS_1290]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376