Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6K23_RS21550 Genome accession   NZ_CP070041
Coordinates   4474676..4475413 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_1293     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4469676..4480413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K23_RS21520 (I6K23_21520) yfiL 4469835..4470200 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  I6K23_RS21525 (I6K23_21525) aroF 4470410..4471480 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I6K23_RS21530 (I6K23_21530) tyrA 4471491..4472612 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6K23_RS21535 (I6K23_21535) pheA 4472655..4473815 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6K23_RS21540 (I6K23_21540) pheL 4473914..4473961 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I6K23_RS21545 (I6K23_21545) raiA 4474065..4474406 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6K23_RS21550 (I6K23_21550) comL 4474676..4475413 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6K23_RS21555 (I6K23_21555) rluD 4475548..4476528 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6K23_RS21560 (I6K23_21560) yfiH 4476525..4477256 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  I6K23_RS21565 (I6K23_21565) clpC 4477386..4479959 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=472073 I6K23_RS21550 WP_000197686.1 4474676..4475413(-) (comL) [Escherichia coli strain FDAARGOS_1293]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=472073 I6K23_RS21550 WP_000197686.1 4474676..4475413(-) (comL) [Escherichia coli strain FDAARGOS_1293]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376