Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H3303_RS26735 Genome accession   NZ_CP059738
Coordinates   6058114..6059460 (+) Length   448 a.a.
NCBI ID   WP_016986217.1    Uniprot ID   A0A7H8GFF1
Organism   Pseudomonas sp. 29A     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6053114..6064460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3303_RS26710 (H3303_26710) pgeF 6053320..6054042 (-) 723 WP_175553177.1 peptidoglycan editing factor PgeF -
  H3303_RS26715 (H3303_26715) rluD 6054039..6055001 (-) 963 WP_016986220.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H3303_RS26720 (H3303_26720) - 6055153..6056169 (+) 1017 WP_007909854.1 outer membrane protein assembly factor BamD -
  H3303_RS26725 (H3303_26725) - 6056296..6056538 (+) 243 WP_175553176.1 PP0621 family protein -
  H3303_RS26730 (H3303_26730) pilS 6056528..6058117 (+) 1590 WP_175555645.1 PAS domain-containing sensor histidine kinase Regulator
  H3303_RS26735 (H3303_26735) pilR 6058114..6059460 (+) 1347 WP_016986217.1 sigma-54 dependent transcriptional regulator Regulator
  H3303_RS26740 (H3303_26740) thiO 6059576..6060676 (-) 1101 WP_016986216.1 glycine oxidase ThiO -
  H3303_RS26745 (H3303_26745) - 6060734..6061135 (-) 402 WP_016986215.1 type IV pilin protein -
  H3303_RS26750 (H3303_26750) - 6061151..6064234 (-) 3084 WP_175553175.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50174.55 Da        Isoelectric Point: 6.4120

>NTDB_id=471697 H3303_RS26735 WP_016986217.1 6058114..6059460(+) (pilR) [Pseudomonas sp. 29A]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQALLDREKFDLCLTDMRLPDGTGLELVQHIQQRYSQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAAGGSFTSIDRRLLGDSPPMRILRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPTELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEVLA
ANMLKRLAKDSAQPVARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=471697 H3303_RS26735 WP_016986217.1 6058114..6059460(+) (pilR) [Pseudomonas sp. 29A]
TTGAACACGAGCCCACGGCAAAAAATTCTTATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTACAGCGCGCGTAATCTGGCTGAAGCCCAAGCGCTGCTGGACCGCGAGAAATTCGATCTGT
GCCTGACAGACATGCGCCTGCCCGATGGTACCGGGCTAGAGTTGGTGCAGCACATCCAGCAACGCTATTCACAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCCATCAACGCTTTGAAAGCAGGTGCTTTCGACTTCCTCACCAA
ACCGGTGGACCTCACTCGTTTGCGCGAACTGGTCGGCACCGCCCTGCGTATGCCGGCGGCGGGAGGCAGCTTTACCTCCA
TCGATCGGCGCTTGCTCGGTGATTCGCCACCGATGCGCATTCTGCGCAAGCAAATCGACAAACTCGCTCGCAGTCAGGCG
CCGGTGTACATCAGCGGCGAATCGGGCAGTGGCAAGGAACTGGTTGCGCGCCTGATTCATGAACAGGGGCCGCGCGCCAG
CCAGCCGTTCGTACCGGTGAACTGCGGAGCGATCCCGACGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGTAAAGGCA
GTTTCACCGGCGCGGTCGAGGACAAGCCCGGGTTATTTCAGGCAGCCCATGGCGGCACGTTGTTTCTCGATGAAGTGGCG
GACTTGCCGTTGTCGATGCAGGTGAAGTTACTGCGCGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTCTGCGCCACGCACAAGGATCTCGATGCAGAGGTCGCGGCCGAACGCTTTCGTCAGG
ATCTTTATTACCGCCTGAACGTGATTGAATTGCGCGTGCCGCCCCTGCGTGAGCGCCGTGATGACATTGAAGTGCTGGCG
GCCAATATGCTCAAGCGTTTGGCCAAGGACAGTGCTCAGCCCGTTGCGCGCCTTCATCCACAGGCGCTGGAAGCGTTGAA
AAATTACCGGTTTCCGGGGAATGTGCGGGAGCTGGAGAACGTGCTTGAGCGGGCACACACCTTGTGTGAAAACCGCACGA
TCGAGGCTGAAGATTTACGTCTGAGCGAAGGCAACTGCGCGGCGGACGGCGGGATTGCCGATCTGACGCAGATCGACAAT
CTGGAAGATTATCTGGAGAACGTCGAGAGGAAGCTGATCTTGCAGGCGCTGGAAGAAACACGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTTCGTTCGATGCGCTATCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8GFF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.233

98.884

0.783
  pilR Acinetobacter baumannii strain A118

48.802

100

0.5