Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   H0H24_RS14890 Genome accession   NZ_CP059729
Coordinates   3168081..3168563 (+) Length   160 a.a.
NCBI ID   WP_001046416.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AbCTX13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3163081..3173563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0H24_RS14880 (H0H24_14860) pilX 3163384..3164202 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H0H24_RS14885 (H0H24_14865) pilY1 3164214..3168068 (+) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  H0H24_RS14890 (H0H24_14870) pilY2 3168081..3168563 (+) 483 WP_001046416.1 type IV pilin protein Machinery gene
  H0H24_RS14895 (H0H24_14875) pilE 3168560..3168985 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene
  H0H24_RS14900 (H0H24_14880) rpsP 3169132..3169383 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  H0H24_RS14905 (H0H24_14885) rimM 3169403..3169951 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  H0H24_RS14910 (H0H24_14890) trmD 3169997..3170737 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H0H24_RS14915 (H0H24_14895) rplS 3170945..3171313 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  H0H24_RS14920 (H0H24_14900) - 3171366..3172307 (-) 942 WP_086223958.1 triacylglycerol lipase -
  H0H24_RS14925 (H0H24_14905) - 3172422..3173456 (-) 1035 WP_024432274.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17533.80 Da        Isoelectric Point: 8.4817

>NTDB_id=471615 H0H24_RS14890 WP_001046416.1 3168081..3168563(+) (pilY2) [Acinetobacter baumannii strain AbCTX13]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=471615 H0H24_RS14890 WP_001046416.1 3168081..3168563(+) (pilY2) [Acinetobacter baumannii strain AbCTX13]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95

100

0.95
  comE Acinetobacter baylyi ADP1

41.279

100

0.444