Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   H3V20_RS04825 Genome accession   NZ_CP059709
Coordinates   916820..918001 (+) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni strain C41     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 911820..923001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3V20_RS04800 (H3V20_04800) ctsR 912381..912692 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H3V20_RS04805 (H3V20_04805) ctsD 912670..914082 (+) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H3V20_RS04810 (H3V20_04810) ctsP 914075..914683 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H3V20_RS04815 (H3V20_04815) ctsX 914687..915274 (+) 588 WP_002858864.1 hypothetical protein Machinery gene
  H3V20_RS04820 (H3V20_04820) ctsE 915264..916823 (+) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  H3V20_RS04825 (H3V20_04825) ctsF 916820..918001 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  H3V20_RS04830 (H3V20_04830) - 917994..918758 (-) 765 WP_002855821.1 TSUP family transporter -
  H3V20_RS04835 (H3V20_04835) - 918762..919526 (-) 765 WP_002851318.1 TIGR02757 family protein -
  H3V20_RS04840 (H3V20_04840) flgK 919543..921369 (-) 1827 WP_002858862.1 flagellar hook-associated protein FlgK -
  H3V20_RS04845 (H3V20_04845) - 921379..921813 (-) 435 WP_002858861.1 flagellar protein FlgN -
  H3V20_RS04850 (H3V20_04850) flgM 921856..922053 (-) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  H3V20_RS04855 (H3V20_04855) - 922116..922457 (-) 342 WP_002784057.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=471500 H3V20_RS04825 WP_002868229.1 916820..918001(+) (ctsF) [Campylobacter jejuni strain C41]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=471500 H3V20_RS04825 WP_002868229.1 916820..918001(+) (ctsF) [Campylobacter jejuni strain C41]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACACATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTCTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987