Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H3V20_RS04800 Genome accession   NZ_CP059709
Coordinates   912381..912692 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain C41     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 907381..917692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3V20_RS04780 (H3V20_04780) - 907971..908450 (-) 480 WP_002867426.1 GNAT family N-acetyltransferase -
  H3V20_RS04785 (H3V20_04785) rpmH 908581..908715 (+) 135 WP_002776864.1 50S ribosomal protein L34 -
  H3V20_RS04790 (H3V20_04790) - 908712..908859 (+) 148 Protein_930 ribonuclease P protein component -
  H3V20_RS04795 (H3V20_04795) nifJ 908941..912357 (+) 3417 Protein_931 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H3V20_RS04800 (H3V20_04800) ctsR 912381..912692 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  H3V20_RS04805 (H3V20_04805) ctsD 912670..914082 (+) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H3V20_RS04810 (H3V20_04810) ctsP 914075..914683 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H3V20_RS04815 (H3V20_04815) ctsX 914687..915274 (+) 588 WP_002858864.1 hypothetical protein Machinery gene
  H3V20_RS04820 (H3V20_04820) ctsE 915264..916823 (+) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=471495 H3V20_RS04800 WP_002855438.1 912381..912692(+) (ctsR) [Campylobacter jejuni strain C41]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=471495 H3V20_RS04800 WP_002855438.1 912381..912692(+) (ctsR) [Campylobacter jejuni strain C41]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGGCATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1