Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6K29_RS03445 Genome accession   NZ_CP069978
Coordinates   720778..722205 (-) Length   475 a.a.
NCBI ID   WP_000980617.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1299     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 715778..727205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K29_RS03410 (I6K29_03410) hisL 716362..716412 (-) 51 WP_001364200.1 his operon leader peptide -
  I6K29_RS03415 (I6K29_03415) yefM 716695..716946 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  I6K29_RS03420 (I6K29_03420) yoeB 716943..717197 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  I6K29_RS03425 (I6K29_03425) yeeZ 717280..718104 (+) 825 WP_000754733.1 SDR family oxidoreductase -
  I6K29_RS03430 (I6K29_03430) yeeY 718150..719079 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  I6K29_RS03435 (I6K29_03435) yoeI 719294..719356 (+) 63 WP_010723108.1 membrane protein YoeI -
  I6K29_RS03440 (I6K29_03440) plaP 719346..720704 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  I6K29_RS03445 (I6K29_03445) sbcB 720778..722205 (-) 1428 WP_000980617.1 exodeoxyribonuclease I Machinery gene
  I6K29_RS03450 (I6K29_03450) dacD 722414..723579 (+) 1166 Protein_680 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6K29_RS03455 (I6K29_03455) sbmC 723698..724171 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6K29_RS03460 (I6K29_03460) yeeA 724369..725427 (+) 1059 WP_001200890.1 FUSC family protein -
  I6K29_RS03465 (I6K29_03465) tmaR 725599..725928 (+) 330 WP_000450409.1 DUF496 family protein -
  I6K29_RS25440 (I6K29_03470) - 726029..726211 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6K29_RS25140 - 726331..726411 (+) 81 WP_023441679.1 hypothetical protein -
  I6K29_RS03480 (I6K29_03480) - 726700..726780 (-) 81 Protein_686 hypothetical protein -
  I6K29_RS03485 (I6K29_03485) yeeW 726826..727020 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54541.87 Da        Isoelectric Point: 5.6114

>NTDB_id=471495 I6K29_RS03445 WP_000980617.1 720778..722205(-) (sbcB) [Escherichia coli strain FDAARGOS_1299]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=471495 I6K29_RS03445 WP_000980617.1 720778..722205(-) (sbcB) [Escherichia coli strain FDAARGOS_1299]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCAGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581