Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   H3V20_RS02805 Genome accession   NZ_CP059709
Coordinates   532924..533574 (+) Length   216 a.a.
NCBI ID   WP_002852117.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni strain C41     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 527924..538574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3V20_RS02785 (H3V20_02785) - 528798..530240 (-) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -
  H3V20_RS02790 (H3V20_02790) fbaA 530335..531399 (-) 1065 WP_057044089.1 class II fructose-bisphosphate aldolase -
  H3V20_RS02795 (H3V20_02795) peb4 531399..532220 (-) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  H3V20_RS02800 (H3V20_02800) nth 532301..532927 (+) 627 WP_002852225.1 endonuclease III -
  H3V20_RS02805 (H3V20_02805) CJE0566 532924..533574 (+) 651 WP_002852117.1 DNA/RNA non-specific endonuclease Regulator
  H3V20_RS02810 (H3V20_02810) - 533585..534217 (+) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  H3V20_RS02815 (H3V20_02815) - 534275..534709 (+) 435 WP_002855128.1 EexN family lipoprotein -
  H3V20_RS02820 (H3V20_02820) - 534706..534927 (+) 222 WP_002859102.1 EexN family lipoprotein -
  H3V20_RS02825 (H3V20_02825) cmoA 534917..535627 (-) 711 WP_079744398.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  H3V20_RS02830 (H3V20_02830) ribF 535614..536468 (-) 855 WP_002873780.1 bifunctional riboflavin kinase/FAD synthetase -
  H3V20_RS02835 (H3V20_02835) tlyA 536434..537195 (-) 762 WP_032590817.1 TlyA family RNA methyltransferase -
  H3V20_RS02840 (H3V20_02840) - 537192..538196 (-) 1005 WP_079344011.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=471490 H3V20_RS02805 WP_002852117.1 532924..533574(+) (CJE0566) [Campylobacter jejuni strain C41]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=471490 H3V20_RS02805 WP_002852117.1 532924..533574(+) (CJE0566) [Campylobacter jejuni strain C41]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63