Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   H3M14_RS09320 Genome accession   NZ_CP059697
Coordinates   1825450..1825878 (-) Length   142 a.a.
NCBI ID   WP_154255254.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CBA3635     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1820450..1830878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3M14_RS09310 (H3M14_09310) secA 1822166..1824529 (-) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  H3M14_RS09315 (H3M14_09315) hpf 1824778..1825323 (-) 546 WP_011374202.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  H3M14_RS09320 (H3M14_09320) comFC 1825450..1825878 (-) 429 WP_154255254.1 ComF family protein Machinery gene
  H3M14_RS09325 (H3M14_09325) comFA 1826121..1827458 (-) 1338 WP_052039239.1 DEAD/DEAH box helicase Machinery gene
  H3M14_RS09330 (H3M14_09330) - 1827520..1828185 (+) 666 WP_025016329.1 YigZ family protein -
  H3M14_RS09335 (H3M14_09335) - 1828212..1829300 (-) 1089 WP_035144637.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16678.13 Da        Isoelectric Point: 10.0721

>NTDB_id=471413 H3M14_RS09320 WP_154255254.1 1825450..1825878(-) (comFC) [Latilactobacillus sakei strain CBA3635]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASSQFFELIPQELPHKPQSIIILDDIYTTGRTVWHAQQCLRARYPQIAINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=471413 H3M14_RS09320 WP_154255254.1 1825450..1825878(-) (comFC) [Latilactobacillus sakei strain CBA3635]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGCTATTGAAAAAGCGGCCAACAGAGAAGGGCCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTTCACAATTTTTTGAATTAATACCGCAAGAATTACCGCATAAGCCACAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTCGGTATCCACAAATTG
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

95.775

100

0.958
  comFC Lactococcus lactis subsp. cremoris KW2

38.028

100

0.38