Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H3N35_RS02650 Genome accession   NZ_CP059693
Coordinates   615696..616403 (+) Length   235 a.a.
NCBI ID   WP_274052682.1    Uniprot ID   -
Organism   Thalassomonas haliotis strain A5K-61T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 610696..621403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3N35_RS02640 (H3N35_02635) - 611168..612283 (+) 1116 WP_274052680.1 efflux RND transporter periplasmic adaptor subunit -
  H3N35_RS02645 (H3N35_02640) - 612303..615434 (+) 3132 WP_274052681.1 efflux RND transporter permease subunit -
  H3N35_RS02650 (H3N35_02645) ssb 615696..616403 (+) 708 WP_274052682.1 single-stranded DNA-binding protein Machinery gene
  H3N35_RS02655 (H3N35_02650) - 616701..617558 (+) 858 WP_274052683.1 HEPN domain-containing protein -
  H3N35_RS02660 (H3N35_02655) - 617749..621402 (-) 3654 WP_274052684.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25215.58 Da        Isoelectric Point: 5.9151

>NTDB_id=471347 H3N35_RS02650 WP_274052682.1 615696..616403(+) (ssb) [Thalassomonas haliotis strain A5K-61T]
MAGVNKVIILGNLGKDPEVRFMPNGGGVANLTIATSETWKDKQTGEQKEKTEWHRVVMFGKLAEIAGEYLKKGSKVYIEG
SLQTRKWQNQQGQDQYTTEIVVQGFNGTMQMLDSRGQGGGQGGGFQGQQQGGFSGGQQAPQQQGGFQQQAPKQQGGFPQQ
GGQQAAPQQQGGFSQQAPQQQAPQQGGFSGGQQQAAPQQGGFQQQQGGFGQQNQQQAAKVNPQEPSIDFDDDIPF

Nucleotide


Download         Length: 708 bp        

>NTDB_id=471347 H3N35_RS02650 WP_274052682.1 615696..616403(+) (ssb) [Thalassomonas haliotis strain A5K-61T]
ATGGCCGGTGTTAACAAAGTAATCATTTTAGGTAATTTAGGTAAAGATCCTGAAGTACGTTTTATGCCTAATGGTGGTGG
GGTAGCTAACCTAACCATCGCAACTTCAGAAACCTGGAAAGATAAGCAAACCGGTGAGCAAAAAGAAAAAACCGAATGGC
ACCGTGTGGTAATGTTCGGCAAGTTAGCCGAAATTGCCGGTGAGTACCTGAAAAAAGGCTCAAAGGTTTATATCGAAGGT
TCCTTGCAAACCCGCAAATGGCAGAACCAGCAAGGTCAAGACCAGTACACAACTGAAATCGTAGTTCAGGGCTTTAACGG
CACCATGCAGATGTTAGACAGCCGTGGCCAAGGTGGCGGTCAAGGCGGTGGTTTCCAGGGGCAGCAGCAAGGCGGTTTCT
CTGGTGGTCAGCAGGCACCACAACAGCAAGGTGGCTTCCAACAGCAAGCTCCTAAACAGCAAGGTGGTTTCCCACAGCAA
GGCGGACAGCAAGCGGCTCCACAGCAGCAGGGTGGCTTCTCTCAGCAGGCACCACAGCAGCAAGCTCCTCAGCAAGGCGG
TTTCTCTGGCGGTCAGCAGCAGGCGGCACCTCAACAGGGCGGTTTCCAACAGCAGCAAGGCGGTTTTGGTCAGCAGAACC
AACAGCAAGCGGCTAAGGTTAACCCACAAGAGCCTTCAATCGACTTTGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.502

99.149

0.511
  ssb Glaesserella parasuis strain SC1401

47.66

100

0.477