Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6L03_RS16465 Genome accession   NZ_CP069945
Coordinates   3512616..3513353 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_1373     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3507616..3518353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L03_RS16450 (I6L03_16450) clpC 3508070..3510643 (-) 2574 WP_001314061.1 ATP-dependent chaperone ClpB Regulator
  I6L03_RS16455 (I6L03_16455) yfiH 3510773..3511504 (-) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  I6L03_RS16460 (I6L03_16460) rluD 3511501..3512481 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6L03_RS16465 (I6L03_16465) comL 3512616..3513353 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6L03_RS16470 (I6L03_16470) raiA 3513623..3513964 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6L03_RS16475 (I6L03_16475) pheL 3514068..3514115 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I6L03_RS16480 (I6L03_16480) pheA 3514214..3515374 (+) 1161 WP_000200125.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6L03_RS16485 (I6L03_16485) tyrA 3515417..3516538 (-) 1122 WP_000225219.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6L03_RS16490 (I6L03_16490) aroF 3516549..3517619 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I6L03_RS16495 (I6L03_16495) yfiL 3517830..3518195 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=471283 I6L03_RS16465 WP_000197686.1 3512616..3513353(+) (comL) [Escherichia coli strain FDAARGOS_1373]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=471283 I6L03_RS16465 WP_000197686.1 3512616..3513353(+) (comL) [Escherichia coli strain FDAARGOS_1373]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376