Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AVBRAN_RS09705 Genome accession   NZ_CP059600
Coordinates   1949404..1950183 (+) Length   259 a.a.
NCBI ID   WP_214150099.1    Uniprot ID   -
Organism   Campylobacter sp. RM12651     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1944404..1955183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVBRAN_RS09685 (AVBRAN_1923) - 1944546..1946456 (-) 1911 WP_214119601.1 ribonuclease R family protein -
  AVBRAN_RS09690 (AVBRAN_1924) - 1946449..1947267 (-) 819 WP_214116357.1 HDOD domain-containing protein -
  AVBRAN_RS09695 (AVBRAN_1925) ilvC 1947367..1948386 (+) 1020 WP_214116355.1 ketol-acid reductoisomerase -
  AVBRAN_RS09700 (AVBRAN_1926) - 1948386..1949429 (+) 1044 WP_239803138.1 divergent polysaccharide deacetylase family protein -
  AVBRAN_RS09705 (AVBRAN_1927) dprA 1949404..1950183 (+) 780 WP_214150099.1 DNA-processing protein DprA Machinery gene
  AVBRAN_RS09710 (AVBRAN_1928) ruvX 1950183..1950557 (+) 375 WP_214119608.1 Holliday junction resolvase RuvX -
  AVBRAN_RS09715 (AVBRAN_1929) - 1950559..1951065 (+) 507 WP_239803139.1 tetratricopeptide repeat protein -
  AVBRAN_RS09720 (AVBRAN_1930) - 1951089..1951745 (+) 657 WP_239803140.1 tetratricopeptide repeat protein -
  AVBRAN_RS09725 (AVBRAN_1931) - 1951762..1952529 (+) 768 WP_239803141.1 tetratricopeptide repeat protein -
  AVBRAN_RS09730 (AVBRAN_1932) - 1952562..1953428 (+) 867 WP_239803142.1 tetratricopeptide repeat protein -
  AVBRAN_RS09735 (AVBRAN_1933) - 1953454..1954221 (+) 768 WP_239803143.1 tetratricopeptide repeat protein -
  AVBRAN_RS09740 (AVBRAN_1934) - 1954238..1955017 (+) 780 WP_239803144.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29116.62 Da        Isoelectric Point: 6.4911

>NTDB_id=471226 AVBRAN_RS09705 WP_214150099.1 1949404..1950183(+) (dprA) [Campylobacter sp. RM12651]
MIYTTIINEFNTLKNPPNKIYYKGNLELLKMPKISIVGSRKMSVYTKNLTFKLAQKLSQIGICVVSGGAIGVDIESAKAS
LPYHIGIFANGLNKIYPKSNELIIKQIYENALALSENEPNHIPLKHDFLARNRLVVALGDILIITQADLKSGSLNSAKHA
LEYGKDIYVLAQRIGESDGTNELIANYKAKIIYDIDIFVAQMQEYFSVQKCYTQNYDEFLEFCKNGANLDEALERYGELV
YDYELDGKIIIDGVLVRSV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=471226 AVBRAN_RS09705 WP_214150099.1 1949404..1950183(+) (dprA) [Campylobacter sp. RM12651]
ATGATATATACAACGATTATAAATGAGTTTAATACTCTTAAAAACCCGCCTAATAAGATTTATTATAAAGGCAATTTAGA
ACTTTTAAAAATGCCTAAAATAAGTATAGTAGGCTCTAGAAAAATGAGCGTTTATACAAAAAATCTAACCTTTAAACTAG
CACAAAAACTAAGCCAAATAGGTATTTGCGTAGTAAGTGGTGGAGCAATTGGAGTAGATATTGAAAGTGCAAAAGCAAGC
CTGCCTTATCATATAGGAATTTTTGCAAATGGGCTTAATAAAATCTATCCAAAAAGCAATGAATTAATCATCAAACAAAT
ATATGAAAACGCCCTAGCGCTAAGCGAAAACGAGCCAAATCATATCCCATTAAAACACGATTTTTTAGCTAGAAATCGCC
TTGTAGTAGCTCTTGGAGATATTTTAATCATCACCCAAGCAGACCTTAAAAGCGGTTCATTAAATTCAGCAAAACACGCC
CTAGAATATGGAAAAGATATTTATGTGTTAGCCCAAAGAATAGGAGAAAGTGATGGCACAAACGAGCTAATCGCAAACTA
TAAGGCAAAAATAATTTATGATATTGATATTTTCGTAGCACAAATGCAAGAATACTTCAGCGTTCAAAAATGCTACACTC
AAAACTACGATGAGTTTTTAGAATTTTGCAAAAACGGAGCAAATCTTGATGAAGCCTTAGAGCGATACGGCGAATTAGTA
TATGATTATGAACTTGATGGAAAAATAATAATTGATGGAGTTTTAGTTAGGAGTGTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.228

91.506

0.533
  dprA Helicobacter pylori 26695

43.426

96.911

0.421