Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AVANS_RS09150 Genome accession   NZ_CP059599
Coordinates   1842399..1843178 (-) Length   259 a.a.
NCBI ID   WP_239817572.1    Uniprot ID   -
Organism   Campylobacter sp. RM5004     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1837399..1848178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVANS_RS09115 (AVANS_1804) - 1837809..1838405 (-) 597 WP_239817565.1 tetratricopeptide repeat protein -
  AVANS_RS09120 (AVANS_1805) - 1838409..1839014 (-) 606 WP_239817566.1 tetratricopeptide repeat protein -
  AVANS_RS09125 (AVANS_1806) - 1839037..1839549 (-) 513 WP_239817567.1 tetratricopeptide repeat protein -
  AVANS_RS09130 (AVANS_1807) - 1839549..1840553 (-) 1005 WP_239817568.1 hypothetical protein -
  AVANS_RS09135 (AVANS_1808) - 1840550..1841416 (-) 867 WP_239817569.1 hypothetical protein -
  AVANS_RS09140 (AVANS_1809) - 1841531..1842025 (-) 495 WP_239817570.1 tetratricopeptide repeat protein -
  AVANS_RS09145 (AVANS_1810) ruvX 1842025..1842399 (-) 375 WP_239817571.1 Holliday junction resolvase RuvX -
  AVANS_RS09150 (AVANS_1811) dprA 1842399..1843178 (-) 780 WP_239817572.1 DNA-processing protein DprA Machinery gene
  AVANS_RS09155 (AVANS_1812) - 1843153..1844190 (-) 1038 WP_239817573.1 divergent polysaccharide deacetylase family protein -
  AVANS_RS09160 (AVANS_1813) ilvC 1844190..1845209 (-) 1020 WP_239817574.1 ketol-acid reductoisomerase -
  AVANS_RS09165 (AVANS_1814) - 1845311..1846129 (+) 819 WP_239817575.1 HDOD domain-containing protein -
  AVANS_RS09170 (AVANS_1815) - 1846122..1848032 (+) 1911 WP_239817576.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29047.39 Da        Isoelectric Point: 6.4972

>NTDB_id=471215 AVANS_RS09150 WP_239817572.1 1842399..1843178(-) (dprA) [Campylobacter sp. RM5004]
MISTTIINEFKTLAKPPKTIYYKGNLSLLNKPKISIVGSRKMSVYTKNATFMLSKKLSNAGFCIVSGGAIGVDIESAKAS
MPYHIGIFANGLNEIYPKSNEQIIKQIYENALALSENEPNHIPQKYDFLTRNRLVVALSDILIIAQADIKSGSLNSAKHA
LELNKDIFVLAQRIGESDGTNELIANYKAKIIYDIDIFVDEMKERFKTQNTYTPHYDEFLEFCKNGANLDEALERYGELV
YDYELDGKVVIDGVLIRSV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=471215 AVANS_RS09150 WP_239817572.1 1842399..1843178(-) (dprA) [Campylobacter sp. RM5004]
ATGATATCTACAACGATTATAAATGAGTTTAAAACTCTTGCAAAGCCACCTAAAACTATTTACTATAAAGGAAATTTAAG
CCTACTAAATAAGCCAAAAATAAGCATAGTAGGTTCAAGAAAAATGAGCGTATATACCAAAAACGCAACCTTTATGCTAA
GCAAAAAGCTAAGTAATGCAGGATTTTGCATAGTAAGCGGTGGAGCAATCGGCGTAGATATTGAAAGTGCAAAAGCAAGT
ATGCCTTATCATATAGGTATATTTGCAAATGGACTTAATGAAATATATCCAAAAAGTAATGAGCAAATCATAAAACAAAT
TTATGAAAACGCCCTTGCATTAAGCGAAAACGAGCCAAACCATATCCCACAAAAATATGACTTTTTGACTAGAAATCGCC
TTGTGGTTGCTCTAAGTGACATTTTAATAATCGCTCAAGCAGATATTAAAAGTGGCTCGCTAAACTCAGCAAAACACGCA
CTAGAACTTAATAAAGATATTTTTGTATTAGCTCAAAGAATAGGAGAAAGCGATGGCACAAATGAGCTAATCGCAAACTA
TAAGGCTAAAATTATTTATGATATTGATATATTTGTTGATGAGATGAAAGAGCGTTTTAAAACTCAAAACACCTACACTC
CACATTATGATGAGTTTTTAGAATTTTGTAAAAACGGAGCAAATCTTGATGAAGCTTTAGAGCGATACGGCGAATTAGTA
TATGATTATGAGCTTGATGGTAAGGTTGTAATTGATGGAGTATTAATTAGGAGCGTATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.338

91.506

0.552
  dprA Helicobacter pylori 26695

42.276

94.981

0.402