Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CMOL_RS01970 Genome accession   NZ_CP059597
Coordinates   387487..388263 (+) Length   258 a.a.
NCBI ID   WP_239820514.1    Uniprot ID   -
Organism   Campylobacter sp. RM10537     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 382487..393263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMOL_RS01950 (CMOL_0389) - 382928..383272 (+) 345 WP_239820510.1 hydrogenase maturation nickel metallochaperone HypA -
  CMOL_RS01955 (CMOL_0390) - 383273..384238 (-) 966 WP_239820511.1 DNA polymerase III subunit delta -
  CMOL_RS01960 (CMOL_0391) - 384241..386166 (-) 1926 WP_239820512.1 ribonuclease R family protein -
  CMOL_RS01965 (CMOL_0392) - 386382..387497 (+) 1116 WP_239820513.1 divergent polysaccharide deacetylase family protein -
  CMOL_RS01970 (CMOL_0393) dprA 387487..388263 (+) 777 WP_239820514.1 DNA-processing protein DprA Machinery gene
  CMOL_RS01975 (CMOL_0394) ruvX 388260..388640 (+) 381 WP_239820515.1 Holliday junction resolvase RuvX -
  CMOL_RS01980 (CMOL_0395) - 388630..389508 (+) 879 WP_239820516.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CMOL_RS01985 (CMOL_0396) - 389505..390826 (-) 1322 Protein_380 hypothetical protein -
  CMOL_RS01990 (CMOL_0397) msrA 391086..391589 (-) 504 WP_239820517.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CMOL_RS01995 (CMOL_0398) ppa 391621..392139 (-) 519 WP_239820518.1 inorganic diphosphatase -
  CMOL_RS02000 (CMOL_0399) - 392155..392730 (-) 576 WP_200283384.1 adenylate kinase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29173.12 Da        Isoelectric Point: 8.3898

>NTDB_id=471187 CMOL_RS01970 WP_239820514.1 387487..388263(+) (dprA) [Campylobacter sp. RM10537]
MESKILSDDFLDFFKDLKKPPKKLYYRGNLELLRKRKIAIIGSRKMSIYTKNCVFSLASMLKNSGICVVSGGALGVDINA
SIAAMPYTIGIFANGLNQIYPKSNEKIIKQMYQEALALSEYEEDYIPKKYDFLLRNRLIIALSEAVVVAQADINSGSMQS
AKLALELKKPLYVLPHRINESSGTNLFLKEKKAELIYDFKEFVGQFAKVCEDVQDEFLDFCKKGVSIDEALAIYGEKVYE
YELEGKISVEGLLIRVLK

Nucleotide


Download         Length: 777 bp        

>NTDB_id=471187 CMOL_RS01970 WP_239820514.1 387487..388263(+) (dprA) [Campylobacter sp. RM10537]
ATGGAAAGTAAAATTTTAAGCGACGATTTTCTAGACTTTTTTAAAGATTTAAAAAAACCTCCAAAAAAACTCTACTACAG
AGGAAATTTAGAGCTTTTAAGAAAACGCAAAATTGCAATCATTGGTTCAAGAAAAATGAGTATTTATACAAAAAATTGTG
TTTTTTCTTTAGCCAGCATGCTTAAAAATTCAGGAATTTGTGTTGTAAGTGGTGGAGCTTTGGGGGTTGATATTAATGCA
AGTATCGCTGCTATGCCCTATACAATAGGAATTTTTGCAAATGGCTTAAATCAAATTTATCCAAAGAGTAATGAAAAAAT
TATTAAGCAAATGTATCAAGAAGCCTTAGCTCTAAGCGAATATGAAGAAGATTATATTCCTAAAAAGTATGATTTTTTAC
TTAGAAATCGTTTGATTATTGCTTTAAGTGAGGCTGTTGTAGTTGCTCAAGCTGATATTAACAGTGGCTCTATGCAAAGT
GCTAAACTTGCTTTAGAATTAAAAAAACCTTTGTATGTTTTACCTCATAGGATTAATGAAAGTAGCGGAACGAATTTATT
TTTAAAAGAAAAAAAAGCGGAATTAATTTATGACTTTAAGGAATTTGTTGGTCAGTTTGCAAAAGTTTGTGAGGATGTGC
AAGATGAATTTTTAGATTTTTGCAAAAAAGGTGTTAGTATTGATGAAGCTTTGGCAATTTATGGTGAAAAAGTCTATGAA
TATGAACTTGAGGGTAAAATTTCCGTTGAGGGATTATTAATAAGAGTTTTAAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(13-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.21

99.612

0.779
  dprA Helicobacter pylori 26695

47.5

93.023

0.442