Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | KHP_RS07035 | Genome accession | NC_017382 |
| Coordinates | 1441114..1441689 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203550.1 | Uniprot ID | - |
| Organism | Helicobacter pylori 51 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1436114..1446689
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHP_RS08410 | - | 1437706..1438263 (-) | 558 | WP_041202054.1 | restriction endonuclease subunit S | - |
| KHP_RS08415 | - | 1438290..1439045 (-) | 756 | WP_000580114.1 | restriction endonuclease subunit S | - |
| KHP_RS07030 (KHP_1323) | - | 1439042..1441081 (-) | 2040 | WP_001147695.1 | HsdM family class I SAM-dependent methyltransferase | - |
| KHP_RS07035 (KHP_1324) | comFC | 1441114..1441689 (-) | 576 | WP_001203550.1 | ComF family protein | Machinery gene |
| KHP_RS07040 (KHP_1325) | tmk | 1441677..1442252 (-) | 576 | WP_000289742.1 | dTMP kinase | - |
| KHP_RS07045 (KHP_1326) | coaD | 1442254..1442727 (-) | 474 | WP_001169265.1 | pantetheine-phosphate adenylyltransferase | - |
| KHP_RS07050 (KHP_1327) | - | 1442727..1443290 (-) | 564 | WP_000780123.1 | UbiX family flavin prenyltransferase | - |
| KHP_RS07055 (KHP_1328) | flgA | 1443300..1443956 (-) | 657 | WP_000697663.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| KHP_RS07060 (KHP_1329) | uvrD | 1443953..1445998 (-) | 2046 | WP_000345170.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21354.00 Da Isoelectric Point: 9.4390
>NTDB_id=47117 KHP_RS07035 WP_001203550.1 1441114..1441689(-) (comFC) [Helicobacter pylori 51]
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=47117 KHP_RS07035 WP_001203550.1 1441114..1441689(-) (comFC) [Helicobacter pylori 51]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGTGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGTGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCCTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
38.144 |
100 |
0.387 |