Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IXO675_RS08085 Genome accession   NZ_CP059589
Coordinates   1708706..1710157 (-) Length   483 a.a.
NCBI ID   WP_171970756.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain IXO675     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703706..1715157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXO675_RS08055 (IXO675_008030) - 1703953..1704582 (+) 630 WP_011408070.1 hypothetical protein -
  IXO675_RS23300 (IXO675_008035) - 1704552..1706079 (+) 1528 Protein_1541 hypothetical protein -
  IXO675_RS08065 (IXO675_008040) pilB 1706114..1707847 (+) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IXO675_RS08070 (IXO675_008045) - 1707856..1708116 (-) 261 WP_011408073.1 Fic family protein -
  IXO675_RS08075 - 1708204..1708365 (-) 162 WP_153296778.1 hypothetical protein -
  IXO675_RS08080 (IXO675_008050) - 1708427..1708633 (-) 207 WP_027703281.1 YhfG family protein -
  IXO675_RS08085 (IXO675_008055) pilR 1708706..1710157 (-) 1452 WP_171970756.1 sigma-54 dependent transcriptional regulator Regulator
  IXO675_RS08090 (IXO675_008060) - 1710428..1712041 (-) 1614 WP_011258366.1 HAMP domain-containing sensor histidine kinase -
  IXO675_RS08095 (IXO675_008065) sucC 1712275..1713444 (+) 1170 WP_075243952.1 ADP-forming succinate--CoA ligase subunit beta -
  IXO675_RS08100 (IXO675_008070) sucD 1713469..1714344 (+) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  IXO675_RS08105 (IXO675_008075) - 1714665..1714961 (+) 297 WP_075242834.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52446.18 Da        Isoelectric Point: 6.8290

>NTDB_id=471123 IXO675_RS08085 WP_171970756.1 1708706..1710157(-) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO675]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=471123 IXO675_RS08085 WP_171970756.1 1708706..1710157(-) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO675]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462