Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   I6K16_RS01935 Genome accession   NZ_CP069893
Coordinates   374201..374857 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain FDAARGOS_1286     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 369201..379857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K16_RS01905 (I6K16_01905) yecA 370452..371117 (-) 666 WP_000847885.1 UPF0149 family protein YecA -
  I6K16_RS01925 (I6K16_01925) pgsA 371767..372315 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6K16_RS01930 (I6K16_01930) uvrC 372372..374204 (-) 1833 WP_001283427.1 excinuclease ABC subunit UvrC Machinery gene
  I6K16_RS01935 (I6K16_01935) letA 374201..374857 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  I6K16_RS25590 - 374999..375115 (+) 117 WP_001302039.1 hypothetical protein -
  I6K16_RS01940 (I6K16_01940) yecU 375153..375329 (+) 177 WP_000590344.1 protein YecU -
  I6K16_RS01945 (I6K16_01945) yecF 375316..375540 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  I6K16_RS01950 (I6K16_01950) sdiA 375607..376329 (-) 723 WP_001154273.1 transcriptional regulator SdiA -
  I6K16_RS01955 (I6K16_01955) tcyN 376559..377311 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  I6K16_RS01960 (I6K16_01960) tcyL 377308..377976 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  I6K16_RS01965 (I6K16_01965) dcyD 377991..378977 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=471063 I6K16_RS01935 WP_000611335.1 374201..374857(-) (letA) [Escherichia coli strain FDAARGOS_1286]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=471063 I6K16_RS01935 WP_000611335.1 374201..374857(-) (letA) [Escherichia coli strain FDAARGOS_1286]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486