Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   KHP_RS01750 Genome accession   NC_017382
Coordinates   347395..347799 (+) Length   134 a.a.
NCBI ID   WP_000599227.1    Uniprot ID   A0AAI7ZV34
Organism   Helicobacter pylori 51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 342395..352799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHP_RS01715 (KHP_0321) - 342572..343510 (-) 939 WP_000833953.1 tetraacyldisaccharide 4'-kinase -
  KHP_RS01720 (KHP_0322) - 343507..344289 (-) 783 WP_001168221.1 NAD+ synthase -
  KHP_RS01730 (KHP_0323) ilvC 344538..345530 (+) 993 WP_001207775.1 ketol-acid reductoisomerase -
  KHP_RS01735 (KHP_0324) minD 345550..346356 (+) 807 WP_001029123.1 septum site-determining protein MinD -
  KHP_RS01740 (KHP_0325) minE 346353..346586 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  KHP_RS01745 (KHP_0326) dprA 346598..347398 (+) 801 WP_000840087.1 DNA-processing protein DprA Machinery gene
  KHP_RS01750 (KHP_0327) dprB 347395..347799 (+) 405 WP_000599227.1 Holliday junction resolvase RuvX Machinery gene
  KHP_RS08485 (KHP_0328) - 348093..348440 (+) 348 WP_324185890.1 tetratricopeptide repeat protein -
  KHP_RS08490 - 348511..348606 (+) 96 WP_324185892.1 hypothetical protein -
  KHP_RS01760 (KHP_0329) - 348792..349130 (+) 339 WP_000699911.1 hypothetical protein -
  KHP_RS01765 (KHP_0330) - 349114..349674 (+) 561 WP_000037123.1 hypothetical protein -
  KHP_RS01770 (KHP_0331) - 349685..350023 (+) 339 WP_041202009.1 glycoside hydrolase family protein -
  KHP_RS08330 - 350040..350186 (+) 147 WP_180594846.1 hypothetical protein -
  KHP_RS01775 (KHP_0332) - 350206..350367 (+) 162 WP_001871784.1 hypothetical protein -
  KHP_RS08220 - 350519..350782 (-) 264 WP_195154814.1 hypothetical protein -
  KHP_RS01785 (KHP_0333) - 350696..351082 (+) 387 Protein_344 DUF1294 domain-containing protein -
  KHP_RS01790 (KHP_0334) - 351082..351867 (+) 786 WP_000488074.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15197.68 Da        Isoelectric Point: 8.4869

>NTDB_id=47106 KHP_RS01750 WP_000599227.1 347395..347799(+) (dprB) [Helicobacter pylori 51]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNACIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=47106 KHP_RS01750 WP_000599227.1 347395..347799(+) (dprB) [Helicobacter pylori 51]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGAATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAACGAAAGCTATGCGGACACGAATGCGTGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933

Multiple sequence alignment