Detailed information    

insolico Bioinformatically predicted

Overview


Name   lytF   Type   Regulator
Locus tag   I6K87_RS07240 Genome accession   NZ_CP069892
Coordinates   1481560..1483494 (+) Length   644 a.a.
NCBI ID   WP_204982513.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context


Location: 1476560..1488494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS07210 (I6K87_07210) - 1476688..1476915 (-) 228 WP_049533237.1 hypothetical protein -
  I6K87_RS07215 (I6K87_07215) - 1476924..1477874 (-) 951 WP_049533236.1 ketopantoate reductase family protein -
  I6K87_RS07220 (I6K87_07220) purK 1477875..1478963 (-) 1089 WP_049533235.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  I6K87_RS07225 (I6K87_07225) purE 1478950..1479438 (-) 489 WP_037618945.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  I6K87_RS07230 (I6K87_07230) - 1479676..1480110 (-) 435 WP_003032062.1 DUF523 domain-containing protein -
  I6K87_RS07235 (I6K87_07235) purD 1480100..1481365 (-) 1266 WP_021001151.1 phosphoribosylamine--glycine ligase -
  I6K87_RS07240 (I6K87_07240) lytF 1481560..1483494 (+) 1935 WP_204982513.1 GBS Bsp-like repeat-containing protein Regulator
  I6K87_RS07245 (I6K87_07245) purH 1483553..1485100 (-) 1548 WP_070670653.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  I6K87_RS07250 (I6K87_07250) - 1485115..1485282 (-) 168 WP_003027175.1 hypothetical protein -
  I6K87_RS07255 (I6K87_07255) purN 1485340..1485891 (-) 552 WP_003028762.1 phosphoribosylglycinamide formyltransferase -
  I6K87_RS07260 (I6K87_07260) purM 1485891..1486910 (-) 1020 WP_049533231.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence


Protein


Download         Length: 644 a.a.        Molecular weight: 71069.77 Da        Isoelectric Point: 8.0007

>NTDB_id=471024 I6K87_RS07240 WP_204982513.1 1481560..1483494(+) (lytF) [Streptococcus anginosus strain FDAARGOS_1357]
MKKYSQLFLLSSTILGVFSAQLTAQASEADNAQKSSNPATLASNITVNVSGNTASINYTRSQTQVPYTIYHAVWSDENGQ
DDIKWYSAPQTPTTAIDLRQHTGYGTFHVHTYININGKMVGLNGTTFKVEKPASGTVSTTVLGKTAQISFTRNKDQTNAN
ILHAVWSDEKGQDDIKWYTAGQDTTEIDLSNHKGYGVYHVHTYESKNGKMIGLNGTTFNLEKPNPTIQTSFPEPGIMDIQ
IKNVPETIYKLTVPAWSDRNGQDDLQWYAATKNPDGSYNVRVELKKHNYDTGTYHIHLYGESYVKPEFTGLAGITAQVDA
DKLPSEEEQKPFFSVENINKEQGTYTVKVSETSKSKPIQSVRVPIWSTSNQSNIKWYTATNNGDGTFTAAFDIRNHQVLS
GTYTNHIYVKYKDGSEHSYATDSVAMSAEKIKTKVSVDKRSTYLYEVTVTDAYGDGTITLPTWSEVNGQDDIQWYIATKA
GNGIYKFTIDTQKHTGSGLFHTHVYRNLNGQMIGLTGTSYQVEKPAVSFQPNYAAATTYPKGQCTWGAKALAPWAGNYWG
NGGDWAASARRAGFKTGTTPQVGAIICWTDGGYGHVGVVTHVASNTRIQIQEANYAGKQYIGNFRGWFNPHAAGQGAVSY
IYPK

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=471024 I6K87_RS07240 WP_204982513.1 1481560..1483494(+) (lytF) [Streptococcus anginosus strain FDAARGOS_1357]
ATGAAGAAATACAGTCAATTATTTTTACTATCTAGCACTATTTTGGGCGTTTTTTCTGCTCAACTAACTGCTCAAGCCTC
GGAAGCAGATAATGCTCAAAAAAGCTCAAATCCAGCAACTCTTGCTAGCAACATTACCGTCAATGTTTCTGGAAATACAG
CTTCTATTAACTACACACGCTCACAGACACAAGTTCCTTACACCATTTACCATGCTGTTTGGTCTGATGAAAATGGGCAA
GATGACATTAAGTGGTATTCCGCGCCCCAGACACCAACTACAGCTATTGATTTGCGTCAGCACACTGGTTATGGAACCTT
TCACGTCCACACCTATATCAATATCAATGGAAAAATGGTTGGTTTAAACGGAACGACTTTCAAAGTAGAAAAACCAGCTA
GCGGCACGGTTTCTACAACCGTTTTAGGAAAGACTGCTCAAATATCCTTTACTCGAAACAAAGATCAAACAAATGCCAAT
ATTTTACACGCTGTTTGGTCTGACGAAAAAGGACAAGATGACATCAAGTGGTATACGGCAGGGCAAGACACAACAGAAAT
TGACTTATCCAATCATAAAGGATACGGTGTTTACCATGTTCATACTTATGAAAGTAAAAACGGAAAGATGATTGGATTAA
ATGGTACCACTTTTAACCTTGAAAAACCAAATCCTACTATTCAGACTAGCTTTCCTGAGCCTGGTATCATGGATATTCAG
ATCAAAAATGTTCCTGAAACAATCTACAAACTAACCGTTCCGGCTTGGTCTGACCGCAACGGACAGGATGATCTTCAATG
GTATGCAGCTACTAAAAATCCTGATGGAAGCTACAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACACAGGAACTT
ATCACATTCATCTTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAATCACTGCCCAAGTTGATGCT
GATAAATTGCCTTCTGAAGAAGAGCAAAAACCATTCTTCTCTGTTGAAAATATCAATAAAGAACAAGGGACTTATACCGT
CAAAGTTAGTGAAACTTCAAAGTCCAAACCGATTCAATCTGTTCGAGTCCCTATTTGGAGCACGAGCAATCAAAGTAATA
TCAAGTGGTATACAGCCACTAATAACGGTGACGGAACATTTACGGCAGCATTTGATATTCGCAATCATCAAGTTTTGTCT
GGAACATACACCAATCATATTTATGTAAAATATAAAGACGGTAGCGAGCATAGTTACGCAACGGATTCGGTTGCTATGTC
CGCAGAAAAAATTAAAACCAAAGTATCTGTCGATAAACGCTCAACTTATCTTTATGAGGTGACAGTGACAGATGCCTACG
GTGACGGAACAATTACCTTACCGACTTGGTCTGAAGTCAATGGACAAGACGACATTCAGTGGTACATTGCTACTAAAGCT
GGAAATGGAATTTACAAATTCACAATTGATACGCAAAAACACACTGGCAGCGGGCTTTTCCATACACATGTCTACCGCAA
TCTCAACGGTCAAATGATTGGACTAACTGGTACGAGCTATCAAGTAGAGAAACCTGCTGTTTCTTTCCAACCAAATTATG
CCGCAGCAACGACTTATCCAAAAGGGCAATGTACTTGGGGCGCCAAAGCTCTTGCGCCTTGGGCTGGCAATTACTGGGGC
AATGGTGGTGATTGGGCTGCTAGCGCCAGACGAGCTGGTTTTAAAACCGGTACAACTCCACAAGTAGGGGCTATTATTTG
TTGGACAGACGGTGGCTACGGTCATGTTGGAGTTGTTACTCACGTAGCCTCAAACACACGCATTCAGATTCAAGAGGCCA
ACTACGCTGGAAAACAATATATTGGCAACTTCCGTGGCTGGTTCAATCCTCATGCAGCTGGACAAGGAGCAGTTAGTTAC
ATTTATCCAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

45.977

81.056

0.373

  lytF Streptococcus gordonii str. Challis substr. CH1

44.961

80.124

0.36