Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   I6K87_RS05380 Genome accession   NZ_CP069892
Coordinates   1098866..1099921 (-) Length   351 a.a.
NCBI ID   WP_049533495.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093866..1104921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS05350 (I6K87_05350) - 1094897..1095064 (+) 168 WP_000336323.1 cysteine-rich KTR domain-containing protein -
  I6K87_RS05355 (I6K87_05355) - 1095124..1095477 (-) 354 WP_001227347.1 helix-turn-helix transcriptional regulator -
  I6K87_RS05360 (I6K87_05360) - 1095982..1096404 (+) 423 WP_000804885.1 sigma-70 family RNA polymerase sigma factor -
  I6K87_RS05365 (I6K87_05365) - 1096401..1096631 (+) 231 WP_000857133.1 helix-turn-helix domain-containing protein -
  I6K87_RS09910 - 1096857..1097108 (-) 252 WP_001845478.1 hypothetical protein -
  I6K87_RS05370 (I6K87_05370) - 1097092..1097295 (+) 204 WP_000814511.1 excisionase -
  I6K87_RS05375 (I6K87_05375) - 1097377..1098594 (+) 1218 WP_001291561.1 tyrosine-type recombinase/integrase -
  I6K87_RS05380 (I6K87_05380) sepM 1098866..1099921 (-) 1056 WP_049533495.1 SepM family pheromone-processing serine protease Regulator
  I6K87_RS05385 (I6K87_05385) coaD 1099902..1100399 (-) 498 WP_049533496.1 pantetheine-phosphate adenylyltransferase -
  I6K87_RS05390 (I6K87_05390) rsmD 1100389..1100937 (-) 549 WP_180363200.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6K87_RS05395 (I6K87_05395) hpf 1101127..1101669 (-) 543 WP_204982446.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I6K87_RS05400 (I6K87_05400) comFC/cflB 1101747..1102412 (-) 666 WP_204982447.1 ComF family protein Machinery gene
  I6K87_RS05405 (I6K87_05405) comFA/cflA 1102409..1103710 (-) 1302 WP_204982448.1 DEAD/DEAH box helicase Machinery gene
  I6K87_RS05410 (I6K87_05410) - 1103767..1104402 (+) 636 WP_204982449.1 YigZ family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38340.18 Da        Isoelectric Point: 10.1140

>NTDB_id=470993 I6K87_RS05380 WP_049533495.1 1098866..1099921(-) (sepM) [Streptococcus anginosus strain FDAARGOS_1357]
MEKPRNKFKKWPIIAIAGLILLFLSFVVPLPYYIEVPGGAADVRQVLRVDNKEDKEKGSYNFVTVGIQHATFAHLVYAWL
TPFTDIYSAKDLTGGTSDKEYMRINQFYMETSQNLAKYQGLKKAGKDITLKYLGVYVLQVTKNSTFKGILNIADTVTGVN
DKTFNSSKELIDYVGAQKIGSKVKVNYAEDGQKKSATGKIIKLENGKNGIGISLIDRTEVTSNTPIEFSTAGIGGPSAGL
MFSLAIYTQIADPTLRDGRNIAGTGSIDREGKVGEIGGIDKKVVSAAKNGAEIFFAPNNPVTKEAKKANPKAKTNYETAL
ETAKKIKTNMKIVPVKTLQDAIDYLKSTKKS

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=470993 I6K87_RS05380 WP_049533495.1 1098866..1099921(-) (sepM) [Streptococcus anginosus strain FDAARGOS_1357]
ATGGAAAAACCAAGAAATAAATTTAAAAAATGGCCGATAATTGCAATAGCAGGGCTGATTTTGCTTTTCTTATCTTTTGT
AGTTCCCTTGCCTTATTATATTGAGGTGCCAGGTGGTGCAGCAGATGTCCGTCAGGTATTGCGCGTGGACAACAAAGAAG
ATAAGGAAAAAGGTTCTTACAACTTTGTAACGGTTGGGATTCAGCATGCGACCTTTGCTCATTTGGTTTATGCTTGGTTG
ACACCTTTTACAGATATTTATTCGGCGAAGGATTTAACTGGCGGAACTTCTGATAAAGAATACATGCGGATCAATCAGTT
TTATATGGAAACATCGCAAAACCTAGCTAAATACCAAGGGTTGAAAAAAGCTGGCAAAGATATTACTCTGAAATATCTAG
GGGTTTACGTCTTGCAAGTCACAAAGAATTCTACTTTTAAAGGCATTTTAAATATTGCAGATACCGTGACAGGTGTGAAT
GACAAGACTTTCAATAGTTCAAAAGAATTGATAGACTATGTTGGAGCGCAAAAGATTGGCAGCAAAGTCAAGGTGAACTA
TGCAGAAGACGGTCAGAAGAAATCTGCTACAGGTAAAATCATCAAACTTGAAAATGGGAAAAACGGGATTGGTATTAGCT
TGATCGACCGAACAGAAGTCACAAGCAACACACCAATTGAATTTTCAACAGCCGGTATTGGTGGACCAAGTGCGGGCTTG
ATGTTTAGTTTGGCAATTTATACGCAAATTGCAGATCCAACATTGAGAGACGGCAGAAATATTGCTGGGACGGGCTCAAT
TGACCGCGAAGGAAAAGTTGGCGAAATTGGTGGGATTGACAAAAAAGTTGTTTCAGCAGCAAAAAATGGTGCAGAAATTT
TCTTTGCACCAAATAATCCAGTTACTAAGGAAGCTAAAAAAGCTAATCCTAAAGCGAAAACTAACTATGAGACCGCTTTG
GAAACTGCTAAAAAAATTAAGACCAATATGAAAATTGTACCAGTCAAGACCCTGCAAGACGCCATTGATTACCTCAAGAG
CACAAAGAAGTCATAA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(235-300)

PDZ domain (PDZ_2)

(133-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

63.663

98.006

0.624