Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IXO220_RS15675 Genome accession   NZ_CP059582
Coordinates   3358361..3359812 (+) Length   483 a.a.
NCBI ID   WP_171970756.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain IXO220     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3354174..3368338 3358361..3359812 within 0


Gene organization within MGE regions


Location: 3354174..3368338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXO220_RS15660 (IXO220_015715) sucD 3354174..3355049 (-) 876 WP_012444445.1 succinate--CoA ligase subunit alpha -
  IXO220_RS15665 (IXO220_015720) sucC 3355074..3356243 (-) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  IXO220_RS15670 (IXO220_015725) - 3356477..3358090 (+) 1614 WP_012444444.1 HAMP domain-containing sensor histidine kinase -
  IXO220_RS15675 (IXO220_015730) pilR 3358361..3359812 (+) 1452 WP_171970756.1 sigma-54 dependent transcriptional regulator Regulator
  IXO220_RS15680 (IXO220_015735) - 3359885..3360091 (+) 207 WP_027703281.1 YhfG family protein -
  IXO220_RS15685 - 3360153..3360314 (+) 162 WP_153296778.1 hypothetical protein -
  IXO220_RS15690 - 3360402..3360662 (+) 261 WP_011408073.1 Fic family protein -
  IXO220_RS15695 (IXO220_015745) pilB 3360671..3362404 (-) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IXO220_RS15700 (IXO220_015750) - 3362439..3363965 (-) 1527 WP_075241021.1 hypothetical protein -
  IXO220_RS15705 (IXO220_015755) - 3363935..3364564 (-) 630 WP_011408070.1 hypothetical protein -
  IXO220_RS15710 (IXO220_015760) - 3364575..3366164 (-) 1590 WP_011408069.1 phosphoethanolamine transferase -
  IXO220_RS15715 (IXO220_015765) pilA2 3366299..3366724 (-) 426 WP_011408068.1 pilin Machinery gene
  IXO220_RS15720 (IXO220_015770) pilC 3367079..3368338 (+) 1260 WP_011408067.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52446.18 Da        Isoelectric Point: 6.8290

>NTDB_id=470988 IXO220_RS15675 WP_171970756.1 3358361..3359812(+) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO220]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=470988 IXO220_RS15675 WP_171970756.1 3358361..3359812(+) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO220]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462