Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   I6K87_RS04425 Genome accession   NZ_CP069892
Coordinates   893979..897251 (-) Length   1090 a.a.
NCBI ID   WP_049533581.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 888979..902251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS04420 (I6K87_04420) rexA 890302..893982 (-) 3681 WP_204982811.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6K87_RS04425 (I6K87_04425) rexB 893979..897251 (-) 3273 WP_049533581.1 ATP-dependent nuclease subunit B Machinery gene
  I6K87_RS04430 (I6K87_04430) - 897372..898586 (-) 1215 WP_003028048.1 ABC transporter permease -
  I6K87_RS04435 (I6K87_04435) - 898583..899476 (-) 894 WP_049513659.1 ABC transporter ATP-binding protein -
  I6K87_RS04440 (I6K87_04440) - 899673..899885 (-) 213 WP_003025304.1 YdbC family protein -
  I6K87_RS04445 (I6K87_04445) - 899973..900314 (+) 342 WP_049533583.1 hypothetical protein -
  I6K87_RS04450 (I6K87_04450) - 900330..901088 (-) 759 WP_049533584.1 ABC transporter ATP-binding protein -
  I6K87_RS04455 (I6K87_04455) - 901085..901951 (-) 867 WP_003028041.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1090 a.a.        Molecular weight: 125597.50 Da        Isoelectric Point: 5.1632

>NTDB_id=470982 I6K87_RS04425 WP_049533581.1 893979..897251(-) (rexB) [Streptococcus anginosus strain FDAARGOS_1357]
MKLLYTDIRNPLTNILTEEAERLAQAGKRVFYIAPNSLSFEKERAVLRLLENRASFAITVTRFAQMARYFVLNDVQQGRP
LDDIGLGMLFYKVLSEMEEHDLQVYGGIRTDAQFIQQLVELYHELQEAQMTVADLDYLDEDEKKADLIKILQAVMHQLNQ
SEFTSESNIMAFANHIIAADVDKELQGLALVIDGFTRFSAEEAYLVELLHRKGVEIVIGAYASEKAYRATFREGNLYQAS
VDFLRHLADKYKVKPEYRPSIQPDDAFGKISKLLESRYDFSDVELELTEQDRSHVQIWSTVNQKEELEYVAKSIRQRVHD
GARYKDIRVLLGDVEAYRLQLKTIFDQYQIPFYLGRSESMAHHPLVQFIESLVRLKRYNFRTEDLLNLVKTGLYGRLTQE
ELDLFEQYIRFADVKGISKFSKDFTHNQHQKFDLIHINQLRKKIVTPLLEFFKSRSQTATGLLQKFHHFLTEIAFSQNFA
SLVDFTNLQDQERQEEVWKAFCHVLEQFASVFSANKVKLDDFLALVQSGMLLSNYRTIPATVDVVTVQSYDLIEPLSSPF
VYAVGLTQDYFPKIAQNKSLLSDEDRLRLNEATDEHSELLIAAQENLQKNRFVALSLLNAATERLVLSTPQIVNEIENNI
SPYLLELHERPIELPIEVKRPQATSDDIGTYRALLARVIELNQGDIDRECSLTEKEQTFWSVVVRVLRKKLESEGISIPN
VTSSLETETLSTQTLQVLYPPHQAFQLSTSALTEFYRNQYAYFLKYVLALQEEMTIHPDARSHGNFLHRVFEKVMQEQSS
ESFDHRLEKAIQEASQEAEFEALYTENAEALFAHEVLLDTARATGQVLERNDLVETIQEEAVFGQEETNVLTLSDGRNLQ
IRGKVDRIDRLRSDGSLGIVDYKSSDTNFDFQKFFNGLNSQLPTYLMALKQEKWANDEVQTFGAMYLQMANPLVPLAKTK
SQGDAVKEAMKNLEYKGLFLSEQARQLNGLYDKKKVNLLSQEELETLLAYNALLYRRAAEQILAGHFYINPYTENGKSIA
PFVEQYKSITGFEANLHLSSARRLVKLDSHPTGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3273 bp        

>NTDB_id=470982 I6K87_RS04425 WP_049533581.1 893979..897251(-) (rexB) [Streptococcus anginosus strain FDAARGOS_1357]
ATGAAATTACTTTATACGGATATTCGCAATCCCTTAACAAACATTCTAACAGAAGAAGCAGAGCGTTTAGCACAAGCAGG
CAAGCGCGTGTTTTATATTGCACCCAACTCTCTTTCATTTGAAAAGGAAAGAGCCGTTTTGCGTCTTTTAGAAAACCGTG
CTTCATTTGCCATTACGGTGACACGTTTTGCGCAGATGGCGCGTTATTTTGTCCTCAATGATGTGCAGCAAGGCAGACCA
TTAGACGATATTGGTTTGGGAATGCTCTTTTATAAGGTCTTATCTGAAATGGAAGAGCATGATTTGCAGGTGTACGGCGG
CATTCGGACGGATGCGCAGTTTATTCAGCAATTGGTTGAGCTTTATCATGAGTTGCAAGAAGCTCAAATGACTGTTGCAG
ACTTGGACTATCTGGATGAAGACGAGAAAAAAGCAGATTTAATCAAGATTTTACAAGCTGTTATGCATCAGCTGAATCAG
AGTGAATTTACTTCTGAGTCAAATATCATGGCCTTTGCCAATCACATTATAGCAGCTGATGTAGATAAAGAATTGCAAGG
ATTGGCTTTGGTCATTGACGGTTTTACACGGTTTTCTGCTGAGGAAGCTTATTTGGTAGAGCTGCTACATCGTAAAGGTG
TGGAAATCGTCATTGGTGCTTATGCAAGTGAAAAAGCTTATCGTGCGACTTTTCGAGAGGGCAATCTCTATCAGGCTAGC
GTGGATTTCTTGCGCCATTTGGCAGATAAATATAAGGTAAAACCTGAATATAGACCGTCAATACAGCCAGATGATGCTTT
TGGAAAGATTTCAAAACTGCTAGAAAGCCGCTATGATTTCTCAGATGTTGAGTTGGAATTGACGGAGCAAGACCGCTCGC
ATGTACAGATTTGGTCGACTGTCAATCAAAAAGAAGAACTGGAATATGTGGCAAAGAGCATTCGCCAGCGAGTTCATGAC
GGTGCTCGCTACAAGGATATTCGCGTTCTTTTGGGAGATGTAGAAGCCTATCGTTTGCAGTTAAAGACGATTTTTGATCA
GTATCAGATTCCCTTTTATCTGGGGCGAAGCGAGTCTATGGCACATCACCCTTTGGTGCAATTTATCGAATCTTTAGTGC
GTTTGAAACGCTATAATTTTCGGACGGAGGATTTGCTCAATCTTGTGAAGACAGGTCTTTATGGTCGTTTAACGCAAGAA
GAGCTGGATTTGTTTGAGCAATATATTCGCTTTGCGGATGTAAAAGGGATTAGTAAATTTTCTAAAGATTTTACTCACAA
TCAGCATCAAAAATTTGACTTGATTCACATCAATCAATTAAGAAAAAAAATAGTCACTCCGCTCTTGGAATTTTTCAAAT
CTCGCAGTCAAACAGCGACAGGTCTGCTTCAGAAATTTCATCACTTTTTGACAGAGATTGCTTTTTCTCAGAATTTTGCT
TCTTTAGTAGATTTTACGAACCTGCAAGACCAAGAAAGACAAGAAGAAGTCTGGAAGGCTTTTTGTCATGTTTTGGAACA
ATTTGCTAGTGTCTTTTCAGCTAATAAGGTCAAGCTAGATGATTTTTTGGCTTTAGTGCAGTCAGGAATGCTGTTATCCA
ATTATCGGACTATTCCAGCAACAGTAGACGTTGTGACCGTTCAGTCTTATGATTTGATCGAGCCTTTGTCAAGTCCTTTT
GTCTATGCTGTTGGTTTGACTCAAGACTATTTTCCAAAAATTGCGCAAAACAAGAGCCTCTTGTCAGATGAAGACCGATT
ACGATTAAATGAAGCAACTGATGAGCATTCGGAGTTGCTGATTGCTGCTCAGGAAAATCTCCAGAAAAATCGTTTTGTCG
CCTTGTCACTTCTGAATGCTGCAACGGAGAGGTTGGTGCTCTCTACTCCTCAGATTGTCAATGAAATAGAGAACAACATT
TCTCCATATTTGTTAGAATTGCATGAACGACCAATTGAGCTGCCGATTGAAGTGAAGCGTCCGCAGGCAACAAGTGATGA
TATTGGAACTTATCGAGCTCTGTTGGCGAGGGTTATTGAGTTAAATCAAGGGGATATTGATCGGGAGTGTTCTCTGACTG
AGAAAGAACAGACTTTTTGGTCAGTCGTCGTACGGGTTTTGCGCAAAAAATTGGAAAGCGAAGGGATTTCGATTCCTAAT
GTAACGTCAAGTCTTGAAACAGAAACCTTGTCAACGCAGACATTACAAGTTCTTTATCCGCCTCATCAAGCATTTCAGCT
ATCTACTTCAGCTTTGACAGAATTCTATCGCAATCAATATGCTTATTTTTTGAAGTATGTCTTGGCTTTGCAGGAAGAAA
TGACGATTCATCCAGATGCGCGTAGTCATGGAAATTTTCTGCATCGTGTGTTTGAAAAAGTTATGCAAGAGCAGTCTAGT
GAGTCATTCGATCATCGTCTAGAAAAAGCCATTCAAGAAGCGAGTCAGGAAGCGGAATTTGAAGCTCTTTATACAGAAAA
TGCAGAAGCATTATTTGCTCACGAAGTTTTGCTGGACACCGCGCGTGCGACAGGACAGGTTTTAGAGAGAAATGATTTAG
TCGAAACCATTCAAGAAGAGGCTGTTTTCGGACAGGAAGAAACAAATGTTCTAACCTTGTCAGACGGACGCAATCTTCAA
ATTCGAGGGAAAGTTGACCGCATTGACCGATTGAGAAGTGACGGTAGTCTGGGAATTGTGGATTATAAATCAAGTGACAC
AAATTTTGATTTTCAAAAATTCTTCAATGGTCTAAATTCTCAATTGCCTACATATCTAATGGCGTTGAAGCAAGAAAAGT
GGGCGAATGATGAAGTACAGACTTTTGGTGCCATGTATTTGCAGATGGCCAATCCACTTGTGCCTTTAGCCAAGACGAAG
TCGCAAGGCGACGCTGTCAAAGAAGCAATGAAGAATCTAGAATACAAAGGTCTGTTCTTGTCTGAGCAGGCTCGTCAGCT
GAATGGTTTGTACGATAAAAAGAAAGTGAATCTGTTGAGTCAAGAGGAGCTGGAGACATTGTTGGCTTATAATGCACTCT
TGTATCGCCGTGCTGCTGAGCAGATCTTGGCAGGGCATTTTTACATCAATCCTTATACGGAGAATGGCAAAAGTATTGCA
CCTTTTGTGGAGCAGTACAAGTCCATTACGGGATTTGAAGCGAACCTTCACCTCTCTAGCGCTCGCCGTTTGGTTAAGTT
AGATAGCCACCCGACAGGTGAAAAAAAACGTCAAGCATGGATAGAAAAGATGAAGGAGGAGTTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(746-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

56.466

100

0.569