Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   I6K87_RS04420 Genome accession   NZ_CP069892
Coordinates   890302..893982 (-) Length   1226 a.a.
NCBI ID   WP_204982811.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 885302..898982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS04405 (I6K87_04405) glgD 885596..886735 (-) 1140 WP_003028053.1 glucose-1-phosphate adenylyltransferase subunit GlgD -
  I6K87_RS04410 (I6K87_04410) - 886725..887867 (-) 1143 WP_003028052.1 glucose-1-phosphate adenylyltransferase -
  I6K87_RS04415 (I6K87_04415) glgB 887871..889781 (-) 1911 WP_003028051.1 1,4-alpha-glucan branching protein GlgB -
  I6K87_RS04420 (I6K87_04420) rexA 890302..893982 (-) 3681 WP_204982811.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6K87_RS04425 (I6K87_04425) rexB 893979..897251 (-) 3273 WP_049533581.1 ATP-dependent nuclease subunit B Machinery gene
  I6K87_RS04430 (I6K87_04430) - 897372..898586 (-) 1215 WP_003028048.1 ABC transporter permease -

Sequence


Protein


Download         Length: 1226 a.a.        Molecular weight: 141291.00 Da        Isoelectric Point: 5.3851

>NTDB_id=470981 I6K87_RS04420 WP_204982811.1 890302..893982(-) (rexA) [Streptococcus anginosus strain FDAARGOS_1357]
MKQIPFLSQAEIRALQDQEAQSDKAQKRTPEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVRIDQLFISTFT
VKAASELKERLEKELSKVLKATDDEELKQHLAQQLADIPNADIGTMDSFTQKVLNKYGYLLELAPNFRILQSASEQLLLQ
NEVFEQVFEDFYQSDQATLFKKLVKNFTGQRKDLLGFREQVYKIYAFLQSTSSPIEYLEQDFLKAYAHADFQEEKAQLLA
QTKEALFDLEEFFQYHLANEAKEFPKAKYLENVQRVLDCLASLQGHSSEEAYLTTLNNIVEISRASNGKALTNSGRKEEL
KEIINAYNEKRKEKIQVLRDLADQFYRFEFQVTYHEEAKEILLVLQQFMKSFVTSYLQRKKEENAFEFADISHFAIQILE
EFPDVRHFYRNKYHEVMVDEYQDTNHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKFKLYQDDSQQGKLIV
LKENFRSHVEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPDKKEPNPQYQTEFLIYDGTLETNNEGNDKDVSSVSAG
EVALVIKEIIRLYNEESVPFEDMTLLTASRTRNDVILAEFAKYDIPVVSDGGEDNYLQSVEVMVMLDTLRTINNPLNDYA
LVALLKSPMFTFTEDELARLALQKKVTEANHVVHQENLYEKLKNTLSGHGQHPELITPPLLKKIQQFQEILLDWREFAKI
NSLYDLLWKIYQDRFYYDYVGALPNGAGRQANLYALTLRANDYEKMSFKGLSRFIGMIDKILETQNDLASVVVAAPKHAV
RLMTVHKSKGLEFKYVFLLNTDKAFNRKDSSSALILSRQNGVGIKYVADVAVDVTDKLAPNHVRLSIDTLPYVQNEREIH
LASISEQMRLLYVAMTRAEKKLYLVGKGRQESLEKKTFPAPENGRLAASIRRTMTSFQDWIWALQTVFKNDDLTFSTRFV
TDSDLTSEKIGQLKLKERIVEENLAHNRQSEDIRRALDILENVDRLNTQYRAAIHLPSVRTPSQIKKFYEPVMDTDGVEI
MEKKTPDFIGKTSFELPDFAKKAPVTGAQIGSAVHELMQRIPLNQLPTLAILKETLAQVQAEEIVKKKIDLQKIAGFFET
ELGQLLLKQADKVYREAPFAMLKQDQASGQDFVVRGILDGYLLLMDRIILFDYKTDQYTNPSELVERYQAQLSLYAESLR
RSYGIEKIEKYLVLLGGVQLQVVKVD

Nucleotide


Download         Length: 3681 bp        

>NTDB_id=470981 I6K87_RS04420 WP_204982811.1 890302..893982(-) (rexA) [Streptococcus anginosus strain FDAARGOS_1357]
ATGAAGCAAATTCCATTTTTGAGTCAAGCAGAGATTCGTGCTTTGCAGGATCAAGAAGCACAGTCTGACAAAGCTCAAAA
ACGTACACCAGAGCAAATCGAAGCCATTTACTCCTCCGGTCAAAATATCCTTGTATCTGCTTCTGCAGGCTCAGGAAAAA
CCTTTGTTATGGTGCAGCGGATTATTGACCAAATTCTGCGGGGAGTTCGCATTGACCAGCTCTTCATTTCGACTTTTACC
GTTAAAGCAGCCAGTGAATTAAAAGAGCGCTTGGAGAAAGAGTTATCCAAGGTCTTGAAGGCAACAGATGATGAGGAGCT
CAAACAGCATTTGGCACAGCAATTAGCTGATATTCCGAATGCTGACATTGGTACCATGGATTCTTTCACCCAAAAGGTCC
TCAATAAATATGGTTATCTCCTAGAATTGGCGCCGAATTTTCGCATTTTACAAAGCGCAAGTGAGCAGTTATTGCTGCAA
AATGAAGTTTTCGAGCAAGTTTTTGAAGACTTCTATCAATCTGATCAGGCAACTTTGTTTAAAAAATTAGTCAAAAATTT
TACAGGTCAGAGGAAAGATTTGCTTGGTTTTCGAGAGCAGGTTTATAAGATTTATGCTTTTTTGCAATCCACCAGTAGCC
CAATCGAATACTTAGAACAAGATTTCTTGAAAGCTTACGCTCATGCGGATTTCCAAGAAGAAAAAGCGCAACTTTTAGCA
CAAACAAAAGAAGCCCTTTTTGACCTAGAAGAATTTTTCCAGTATCATTTGGCGAATGAAGCCAAGGAATTTCCCAAAGC
AAAATACCTTGAAAATGTGCAGCGTGTGCTTGATTGTCTGGCAAGTTTACAAGGGCATTCCTCTGAGGAAGCCTATCTCA
CAACGCTCAATAACATTGTAGAAATATCGCGTGCCAGCAATGGAAAAGCCTTGACGAACAGCGGACGAAAAGAAGAATTA
AAAGAAATTATTAACGCCTATAACGAAAAACGCAAAGAAAAAATTCAAGTTTTACGAGATTTGGCAGATCAATTTTATCG
CTTTGAATTTCAAGTGACCTATCATGAGGAAGCCAAGGAAATCTTGCTTGTCTTGCAGCAATTTATGAAATCGTTTGTGA
CAAGCTATCTACAACGGAAAAAAGAAGAAAATGCGTTTGAATTTGCAGATATCAGTCATTTTGCTATTCAGATTTTGGAA
GAATTTCCTGATGTGCGCCATTTTTATCGAAATAAATACCATGAAGTTATGGTGGATGAGTATCAAGACACCAACCATAC
GCAAGAACGTATGCTAGAACTGTTATCAAATGGACATAATCGCTTTATGGTGGGGGATATTAAGCAGTCTATTTATCGTT
TTCGTCAGGCTGATCCACAGATTTTTAACGATAAGTTCAAGTTGTATCAAGACGATAGCCAGCAAGGGAAATTGATTGTT
TTGAAAGAGAATTTCCGCAGTCATGTAGAAGTCTTGGAAGCCACGAATGACGTTTTCAAACGTCTCATGGATGAGGAAGT
GGGAGAAATTGATTACAATGAAACGCATTATCTGGTAGCTGGAAATCCTGATAAGAAAGAGCCAAATCCACAATATCAGA
CGGAGTTTCTCATTTATGACGGAACACTTGAGACGAATAATGAGGGGAATGACAAGGATGTTTCTTCTGTTTCTGCAGGA
GAAGTAGCGCTGGTCATTAAGGAAATTATCCGTCTGTACAATGAGGAAAGTGTCCCGTTTGAAGATATGACATTGCTAAC
GGCTTCGCGGACGCGCAATGATGTGATTTTAGCTGAGTTTGCTAAATACGATATCCCAGTCGTTTCAGACGGTGGCGAGG
ATAATTATTTGCAATCTGTAGAAGTTATGGTGATGTTGGATACCCTGCGTACGATTAACAACCCTCTCAATGATTATGCT
TTAGTGGCGCTTTTAAAGTCGCCAATGTTCACCTTTACAGAAGATGAATTGGCTCGTTTGGCCTTGCAAAAAAAAGTGAC
TGAAGCTAATCACGTTGTTCATCAGGAAAATCTCTATGAGAAATTGAAAAACACTTTGAGTGGACACGGCCAACATCCCG
AACTCATCACACCTCCTCTTTTAAAGAAAATCCAGCAGTTTCAAGAAATACTGCTAGATTGGCGAGAGTTTGCAAAAATA
AATTCGCTCTATGATTTGCTTTGGAAAATCTATCAAGACCGCTTTTATTATGACTATGTAGGAGCCCTACCAAATGGCGC
AGGGCGTCAAGCGAATCTCTACGCTCTTACTTTGCGAGCAAATGACTACGAAAAGATGAGCTTTAAAGGTCTATCTCGTT
TTATTGGGATGATTGACAAAATATTGGAAACACAGAACGATTTGGCGAGTGTCGTCGTTGCGGCTCCGAAGCATGCAGTC
CGCTTGATGACAGTTCATAAGAGCAAAGGTTTGGAATTTAAATATGTATTTTTGCTTAATACGGATAAAGCCTTCAATCG
TAAGGATAGCAGCTCTGCCTTGATTCTCAGTCGTCAAAATGGCGTCGGTATCAAGTATGTCGCGGACGTAGCGGTAGATG
TAACTGATAAGTTGGCGCCTAATCATGTTCGTTTGTCTATCGATACTCTTCCTTATGTGCAAAATGAGCGTGAGATTCAT
TTGGCGAGTATTTCTGAGCAAATGCGTCTGCTCTATGTTGCTATGACGCGGGCAGAAAAAAAGCTATATCTGGTTGGCAA
AGGTCGTCAAGAAAGCTTGGAGAAAAAGACCTTCCCTGCTCCTGAAAATGGTCGTTTAGCAGCCTCCATTAGGCGAACTA
TGACAAGTTTTCAAGACTGGATTTGGGCTTTGCAAACCGTCTTTAAGAATGATGACTTAACCTTTTCAACCCGATTTGTG
ACGGATAGCGATTTAACAAGTGAGAAAATAGGTCAGCTAAAGCTGAAGGAACGGATTGTCGAGGAGAACTTAGCGCACAA
TCGCCAGTCTGAGGATATTCGCAGGGCTTTGGATATTTTGGAAAATGTGGACAGGCTAAATACTCAGTATCGAGCTGCCA
TCCATTTGCCAAGTGTTCGGACACCGAGCCAAATCAAGAAATTTTATGAACCGGTCATGGATACAGACGGCGTTGAAATT
ATGGAGAAAAAAACTCCAGATTTTATTGGAAAAACTTCTTTTGAACTACCTGACTTTGCTAAAAAAGCCCCTGTTACAGG
AGCGCAAATCGGTAGTGCTGTCCATGAACTGATGCAGCGTATTCCTTTAAATCAACTGCCTACATTAGCTATTTTAAAGG
AAACATTGGCTCAGGTGCAGGCAGAAGAAATTGTCAAAAAGAAGATTGATTTGCAAAAGATAGCTGGTTTCTTTGAGACA
GAGCTTGGTCAACTGCTCTTGAAGCAGGCGGATAAAGTTTATCGTGAAGCTCCTTTTGCTATGTTAAAGCAAGATCAAGC
GAGCGGACAGGATTTTGTAGTCCGTGGAATTTTGGACGGTTATCTACTGTTGATGGACCGAATCATTCTCTTTGATTATA
AGACAGATCAATATACAAATCCAAGTGAATTAGTGGAGCGCTACCAAGCGCAATTATCACTTTACGCTGAATCTCTTCGT
CGTTCGTATGGTATTGAAAAAATAGAAAAATATCTAGTGCTGCTAGGCGGAGTTCAACTTCAAGTAGTAAAAGTAGACTA
G


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

60.93

100

0.609