Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HP2018_RS06935 Genome accession   NC_017381
Coordinates   1417720..1418295 (-) Length   191 a.a.
NCBI ID   WP_001203505.1    Uniprot ID   -
Organism   Helicobacter pylori 2018     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412720..1423295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP2018_RS08745 - 1414394..1415640 (-) 1247 Protein_1339 restriction endonuclease subunit S -
  HP2018_RS06930 (hp2018_14082) - 1415637..1417687 (-) 2051 Protein_1340 N-6 DNA methylase -
  HP2018_RS06935 (hp2018_1409) comFC 1417720..1418295 (-) 576 WP_001203505.1 ComF family protein Machinery gene
  HP2018_RS06940 (hp2018_1410) tmk 1418283..1418858 (-) 576 WP_000289718.1 dTMP kinase -
  HP2018_RS06945 (hp2018_1411) coaD 1418860..1419333 (-) 474 WP_001169228.1 pantetheine-phosphate adenylyltransferase -
  HP2018_RS06950 (hp2018_1412) - 1419333..1419896 (-) 564 WP_000780111.1 UbiX family flavin prenyltransferase -
  HP2018_RS06955 (hp2018_1413) flgA 1419906..1420562 (-) 657 WP_000697684.1 flagellar basal body P-ring formation chaperone FlgA -
  HP2018_RS06960 (hp2018_1414) uvrD 1420559..1422604 (-) 2046 WP_000505296.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21404.02 Da        Isoelectric Point: 8.6744

>NTDB_id=47096 HP2018_RS06935 WP_001203505.1 1417720..1418295(-) (comFC) [Helicobacter pylori 2018]
MRCLICLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNIPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=47096 HP2018_RS06935 WP_001203505.1 1417720..1418295(-) (comFC) [Helicobacter pylori 2018]
ATGCGTTGTTTAATTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTACCCTTGCTTTCTCAAAAGGCCGGTGCGGAATTTGTAAGGATTTTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

93.717

100

0.937
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366

Multiple sequence alignment