Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DXO174_RS17025 Genome accession   NZ_CP059579
Coordinates   3712732..3714123 (+) Length   463 a.a.
NCBI ID   WP_033013168.1    Uniprot ID   A0A854DU87
Organism   Xanthomonas oryzae pv. oryzae strain DXO-174     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3707821..3732795 3712732..3714123 within 0


Gene organization within MGE regions


Location: 3707821..3732795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXO174_RS17005 (DXO174_017025) - 3707821..3708312 (-) 492 WP_027703282.1 hypothetical protein -
  DXO174_RS17010 (DXO174_017030) sucD 3708485..3709360 (-) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  DXO174_RS17015 (DXO174_017035) sucC 3709385..3710554 (-) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  DXO174_RS17020 (DXO174_017040) - 3710788..3712401 (+) 1614 WP_011258366.1 HAMP domain-containing sensor histidine kinase -
  DXO174_RS17025 (DXO174_017045) pilR 3712732..3714123 (+) 1392 WP_033013168.1 sigma-54 dependent transcriptional regulator Regulator
  DXO174_RS17030 (DXO174_017050) - 3714196..3714402 (+) 207 WP_027703281.1 DUF2559 family protein -
  DXO174_RS17035 - 3714464..3714625 (+) 162 WP_153296778.1 hypothetical protein -
  DXO174_RS17040 - 3714695..3714973 (+) 279 WP_229001933.1 Fic family protein -
  DXO174_RS17045 (DXO174_017060) pilB 3714982..3716715 (-) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DXO174_RS17050 (DXO174_017065) - 3716750..3718249 (-) 1500 WP_229002722.1 hypothetical protein -
  DXO174_RS17055 (DXO174_017070) - 3718246..3718875 (-) 630 WP_011408070.1 hypothetical protein -
  DXO174_RS17060 (DXO174_017075) - 3718886..3720475 (-) 1590 WP_075240477.1 phosphoethanolamine transferase -
  DXO174_RS17065 (DXO174_017080) pilA2 3720610..3721035 (-) 426 WP_011408068.1 pilin Machinery gene
  DXO174_RS17070 (DXO174_017085) pilC 3721390..3722649 (+) 1260 WP_011408067.1 type II secretion system F family protein Machinery gene
  DXO174_RS17075 (DXO174_017090) - 3722656..3723519 (+) 864 WP_011258358.1 A24 family peptidase -
  DXO174_RS17080 (DXO174_017095) coaE 3723533..3724141 (+) 609 WP_011258357.1 dephospho-CoA kinase -
  DXO174_RS17085 (DXO174_017100) - 3724212..3725531 (+) 1320 WP_265535934.1 IS701-like element ISXo15 family transposase -
  DXO174_RS17090 (DXO174_017105) - 3725773..3726735 (+) 963 WP_041182297.1 IS1595-like element ISXo2 family transposase -
  DXO174_RS17095 (DXO174_017115) - 3727508..3728464 (-) 957 WP_041182719.1 IS30-like element IS1112b family transposase -
  DXO174_RS17100 (DXO174_017120) - 3728703..3730022 (-) 1320 WP_151420504.1 IS701 family transposase -
  DXO174_RS17105 (DXO174_017125) - 3730137..3730505 (-) 369 WP_011408064.1 hypothetical protein -
  DXO174_RS17110 (DXO174_017130) - 3730511..3732019 (-) 1509 WP_075240223.1 RHS repeat-associated core domain-containing protein -
  DXO174_RS17115 (DXO174_017135) - 3732021..3732350 (-) 330 WP_143685531.1 hypothetical protein -
  DXO174_RS17120 (DXO174_017140) - 3732347..3732646 (-) 300 WP_125168747.1 hypothetical protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50092.42 Da        Isoelectric Point: 6.3268

>NTDB_id=470939 DXO174_RS17025 WP_033013168.1 3712732..3714123(+) (pilR) [Xanthomonas oryzae pv. oryzae strain DXO-174]
MSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRLLGDSSAMESLRATIGKVARS
QAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLPQ
LAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAAV
EPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=470939 DXO174_RS17025 WP_033013168.1 3712732..3714123(+) (pilR) [Xanthomonas oryzae pv. oryzae strain DXO-174]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCAC
CTGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGT
CAGGCGCCGATCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACG
CGCCGCCGGCCCGTTCGTCCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGA
AAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAA
GTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTC
CGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTC
GACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAG
CTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGC
ACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACG
ACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTG
GAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGC
GATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGC
GTTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854DU87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.268

99.784

0.482