Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HBNCFIEN_RS03205 Genome accession   NZ_CP059576
Coordinates   774953..775654 (-) Length   233 a.a.
NCBI ID   WP_370530105.1    Uniprot ID   -
Organism   Legionella sp. PC997     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 769953..780654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBNCFIEN_RS03180 (HBNCFIEN_00641) prfA 770389..771477 (-) 1089 WP_182392644.1 peptide chain release factor 1 -
  HBNCFIEN_RS03185 (HBNCFIEN_00642) hemA 771461..772735 (-) 1275 WP_182392645.1 glutamyl-tRNA reductase -
  HBNCFIEN_RS03190 (HBNCFIEN_00643) - 773007..773288 (+) 282 WP_182392646.1 hypothetical protein -
  HBNCFIEN_RS03195 (HBNCFIEN_00644) - 773300..774364 (+) 1065 WP_182392647.1 RIP metalloprotease -
  HBNCFIEN_RS03200 (HBNCFIEN_00645) - 774458..774817 (+) 360 WP_182392648.1 hypothetical protein -
  HBNCFIEN_RS03205 (HBNCFIEN_00646) comFC 774953..775654 (-) 702 WP_370530105.1 ComF family protein Machinery gene
  HBNCFIEN_RS03210 (HBNCFIEN_00647) bioC 775692..776549 (+) 858 WP_182392649.1 malonyl-ACP O-methyltransferase BioC -
  HBNCFIEN_RS03215 (HBNCFIEN_00648) - 776554..777969 (-) 1416 WP_182392650.1 deoxyribodipyrimidine photo-lyase -
  HBNCFIEN_RS03220 (HBNCFIEN_00649) - 778055..778936 (-) 882 WP_182392651.1 polyprenyl synthetase family protein -
  HBNCFIEN_RS03225 (HBNCFIEN_00650) - 778926..779147 (-) 222 WP_182392652.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26604.43 Da        Isoelectric Point: 9.6037

>NTDB_id=470894 HBNCFIEN_RS03205 WP_370530105.1 774953..775654(-) (comFC) [Legionella sp. PC997]
MRQKIWSLTQSLRLYSICALCNQFHNCKMAVCNACIELLTRLGPACHYCAYPLPDTHLLVCGRCIKKTPYFDRTIIHYIF
EEPLRSLLHQFKYHNGLYLGSFLSHLIVNSLGHETKPQCLIPVPMHPQRIKARGFNHAAVLVRLLAKKLQLPYDLTSCQK
IINTEPQASLDGEHRQRNLRHAFKTKKLPWHHVAIIDDLLTTGSTANELALTLKKSGVKLVDVWCCARTVGKL

Nucleotide


Download         Length: 702 bp        

>NTDB_id=470894 HBNCFIEN_RS03205 WP_370530105.1 774953..775654(-) (comFC) [Legionella sp. PC997]
GTGCGCCAGAAAATATGGAGTTTAACACAAAGTTTACGCTTGTACTCAATATGTGCTCTATGCAACCAATTTCATAATTG
CAAAATGGCGGTATGCAACGCGTGTATTGAGCTCCTGACTCGTTTAGGCCCTGCGTGTCATTACTGCGCTTATCCTTTAC
CTGATACGCATCTGTTAGTCTGCGGTCGCTGTATTAAAAAAACTCCTTATTTCGATCGAACAATTATTCATTACATTTTT
GAAGAGCCACTGCGTAGTCTTTTGCATCAATTTAAATACCATAATGGTCTTTATCTGGGTTCTTTTTTAAGTCACTTGAT
TGTGAATTCTCTCGGTCATGAAACGAAGCCCCAATGTTTAATCCCAGTCCCCATGCATCCGCAACGGATCAAGGCACGTG
GATTTAATCATGCTGCCGTTTTAGTTCGTTTACTCGCCAAAAAACTCCAGTTACCCTATGATTTAACCAGTTGCCAAAAA
ATCATTAATACAGAACCTCAGGCAAGTCTTGATGGAGAACACCGACAAAGAAATCTACGCCATGCGTTTAAAACAAAAAA
ACTTCCATGGCATCATGTAGCAATTATTGATGATCTCTTAACGACCGGAAGCACTGCAAATGAGCTGGCATTGACTTTAA
AAAAGTCGGGAGTAAAACTGGTAGATGTATGGTGCTGTGCACGTACGGTGGGTAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

63.948

100

0.639
  comFC Legionella pneumophila strain ERS1305867

64.615

83.691

0.541