Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HP2018_RS01695 Genome accession   NC_017381
Coordinates   339356..339760 (+) Length   134 a.a.
NCBI ID   WP_000599202.1    Uniprot ID   -
Organism   Helicobacter pylori 2018     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 334356..344760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP2018_RS01660 (hp2018_0338) - 334534..335472 (-) 939 WP_000833883.1 tetraacyldisaccharide 4'-kinase -
  HP2018_RS01665 (hp2018_0339) - 335469..336251 (-) 783 WP_001168254.1 NAD+ synthase -
  HP2018_RS01675 (hp2018_0340) ilvC 336500..337492 (+) 993 WP_001207762.1 ketol-acid reductoisomerase -
  HP2018_RS01680 (hp2018_0341) minD 337516..338322 (+) 807 WP_001019026.1 septum site-determining protein MinD -
  HP2018_RS01685 (hp2018_0342) minE 338319..338552 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HP2018_RS01690 (hp2018_0343) dprA 338559..339359 (+) 801 WP_000835226.1 DNA-processing protein DprA Machinery gene
  HP2018_RS01695 (hp2018_0344) dprB 339356..339760 (+) 405 WP_000599202.1 Holliday junction resolvase RuvX Machinery gene
  HP2018_RS01700 (hp2018_0345) - 339808..340125 (+) 318 WP_014536281.1 SEL1-like repeat protein -
  HP2018_RS01705 (hp2018_0346) - 340312..340650 (+) 339 WP_000699902.1 hypothetical protein -
  HP2018_RS01710 (hp2018_0347) - 340634..341194 (+) 561 WP_001035869.1 hypothetical protein -
  HP2018_RS01715 (hp2018_0348) - 341352..342233 (-) 882 WP_001117181.1 RluA family pseudouridine synthase -
  HP2018_RS01720 (hp2018_0349) recJ 342233..343783 (-) 1551 WP_000810771.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15167.61 Da        Isoelectric Point: 8.7185

>NTDB_id=47089 HP2018_RS01695 WP_000599202.1 339356..339760(+) (dprB) [Helicobacter pylori 2018]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYDNLEHLGKKNKRLATKDGRLDSLSACRILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=47089 HP2018_RS01695 WP_000599202.1 339356..339760(+) (dprB) [Helicobacter pylori 2018]
ATGATTTTAGCGTGCGATGTGGGGCTAAAACGCATTGGAATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAGAACATTCAAGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAACTCTAGCGTAGAAGCTTATGACAATTTAGAGCATTTGGGCAAGAAAAACAAACGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.939

98.507

0.925

Multiple sequence alignment