Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H3L91_RS09335 Genome accession   NZ_CP059571
Coordinates   1923261..1924064 (+) Length   267 a.a.
NCBI ID   WP_007343543.1    Uniprot ID   F2BFN1
Organism   Neisseria bacilliformis strain DSM 23338     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1918261..1929064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L91_RS09305 (H3L91_09305) - 1918591..1919229 (+) 639 WP_040659075.1 hypothetical protein -
  H3L91_RS09310 (H3L91_09310) tatC 1919518..1920279 (-) 762 WP_040659077.1 twin-arginine translocase subunit TatC -
  H3L91_RS09315 (H3L91_09315) tatB 1920457..1920921 (-) 465 WP_007343537.1 Sec-independent protein translocase protein TatB -
  H3L91_RS09320 (H3L91_09320) tatA 1920925..1921128 (-) 204 WP_007343538.1 Sec-independent protein translocase subunit TatA -
  H3L91_RS09325 (H3L91_09325) - 1921182..1921514 (-) 333 WP_040659081.1 histidine triad nucleotide-binding protein -
  H3L91_RS09330 (H3L91_09330) rluD 1922141..1923262 (-) 1122 WP_007343542.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H3L91_RS09335 (H3L91_09335) comL 1923261..1924064 (+) 804 WP_007343543.1 outer membrane protein assembly factor BamD Machinery gene
  H3L91_RS09340 (H3L91_09340) pdxH 1924157..1924789 (+) 633 WP_040659083.1 pyridoxamine 5'-phosphate oxidase -
  H3L91_RS09345 (H3L91_09345) thiD 1924887..1925708 (+) 822 WP_007343545.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  H3L91_RS09350 (H3L91_09350) - 1926215..1926961 (+) 747 WP_007343547.1 TatD family hydrolase -
  H3L91_RS09355 (H3L91_09355) rlmJ 1927056..1927907 (-) 852 WP_040659086.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30735.69 Da        Isoelectric Point: 8.5384

>NTDB_id=470872 H3L91_RS09335 WP_007343543.1 1923261..1924064(+) (comL) [Neisseria bacilliformis strain DSM 23338]
MKKILLIAALGAALAGCASKGTSDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYELLESRFPQGRYAQQAQLDTAY
AYYKDEEREKALAAVERFQKLHPQHPNMDYALYLKGLILFNEDPSFLNKLAAQDWSDRDPKANREAYQAFSELVQRYPQS
KYVEDASARMAKLVDALAGNEMAVARYYAKRGAYLAAANRAQNIVTGFQNTRFVEEALAIMELSYQKMGRPQLAEDTRRI
LQQNFPQSPYLTRPWKDNDAPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=470872 H3L91_RS09335 WP_007343543.1 1923261..1924064(+) (comL) [Neisseria bacilliformis strain DSM 23338]
ATGAAAAAAATTCTTTTAATAGCGGCATTGGGCGCGGCCCTTGCCGGATGCGCCAGCAAAGGCACCAGCGACAAAGACGC
GCAAATCACTCAGGATTGGTCGGTGGAAAAACTCTACGCCGAAGCGCAGGACGAGTTGAACAGCAGCAATTATACCCGCG
CTGTCAAGCTGTACGAACTTTTGGAATCGCGCTTCCCGCAAGGCCGCTACGCGCAGCAGGCGCAGCTCGATACGGCCTAT
GCCTATTATAAGGACGAAGAACGCGAAAAAGCCCTGGCGGCGGTGGAACGCTTCCAGAAGCTGCACCCGCAGCACCCGAA
CATGGACTACGCCCTCTACCTCAAAGGGCTGATTTTGTTTAACGAAGACCCCTCCTTCCTCAACAAACTGGCCGCGCAGG
ACTGGTCCGACCGCGACCCGAAGGCCAACCGCGAAGCCTATCAGGCGTTTTCCGAGCTGGTGCAGCGTTACCCGCAGAGC
AAATACGTGGAAGACGCTTCCGCCCGCATGGCCAAACTGGTGGACGCGCTGGCAGGCAACGAAATGGCCGTCGCCCGCTA
CTACGCCAAACGCGGCGCGTATCTGGCCGCCGCCAACCGCGCGCAAAACATCGTAACCGGCTTCCAAAACACCCGCTTTG
TCGAAGAAGCCCTGGCGATTATGGAGCTGTCCTATCAGAAAATGGGGCGGCCGCAGCTGGCCGAAGACACCCGCCGCATC
TTGCAGCAGAACTTCCCGCAAAGCCCCTACCTCACCCGCCCGTGGAAAGACAACGACGCCCCGTGGTGGCGTTACTGGAA
ATAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2BFN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

76.692

99.625

0.764
  comL Neisseria gonorrhoeae MS11

76.692

99.625

0.764