Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   H3L92_RS05030 Genome accession   NZ_CP059570
Coordinates   1063348..1063866 (-) Length   172 a.a.
NCBI ID   WP_085364874.1    Uniprot ID   -
Organism   Neisseria dentiae strain DSM 19151     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1058348..1068866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS05005 (H3L92_05005) gshA 1058463..1059806 (-) 1344 WP_085364879.1 glutamate--cysteine ligase -
  H3L92_RS05010 (H3L92_05010) leuC 1060048..1061454 (+) 1407 WP_085364878.1 3-isopropylmalate dehydratase large subunit -
  H3L92_RS05015 (H3L92_05015) - 1061584..1061718 (+) 135 WP_085364877.1 entericidin A/B family lipoprotein -
  H3L92_RS05020 (H3L92_05020) leuD 1061794..1062435 (+) 642 WP_085364876.1 3-isopropylmalate dehydratase small subunit -
  H3L92_RS05025 (H3L92_05025) - 1062876..1063340 (-) 465 WP_085364875.1 PilX family type IV pilin -
  H3L92_RS05030 (H3L92_05030) pilK 1063348..1063866 (-) 519 WP_085364874.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H3L92_RS05035 (H3L92_05035) - 1063842..1064798 (-) 957 WP_245945469.1 PilW family protein -
  H3L92_RS05040 (H3L92_05040) pilV 1064817..1065548 (-) 732 WP_115336314.1 type IV pilus modification protein PilV -
  H3L92_RS05045 (H3L92_05045) pilH 1065610..1066281 (-) 672 WP_085364872.1 GspH/FimT family pseudopilin Machinery gene
  H3L92_RS05050 (H3L92_05050) dnaB 1066552..1067961 (-) 1410 WP_085364871.1 replicative DNA helicase -
  H3L92_RS05055 (H3L92_05055) - 1068146..1068679 (+) 534 WP_085364870.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18817.18 Da        Isoelectric Point: 4.8242

>NTDB_id=470825 H3L92_RS05030 WP_085364874.1 1063348..1063866(-) (pilK) [Neisseria dentiae strain DSM 19151]
MRQPQPFITSTPKSAQQGFSLFIVLMVMIVVAFLVVSVTQSYNTEQRISTNDADHKYATALAEAALRTGEKKIADDDLEA
SQFTEECGEALCSVGTKPAWERATCGTSKTESCIDNSSGTLAAREAAKSPRYIIEYISQQPDGSEIYRVTAKAWGKNSNT
VVMLQSYVEAEK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=470825 H3L92_RS05030 WP_085364874.1 1063348..1063866(-) (pilK) [Neisseria dentiae strain DSM 19151]
ATGCGCCAACCGCAGCCTTTCATAACTTCTACACCCAAATCGGCACAGCAGGGTTTTTCACTGTTTATTGTGTTGATGGT
GATGATCGTGGTGGCCTTTTTGGTAGTGAGTGTAACGCAATCGTATAACACTGAGCAGCGTATCAGCACCAACGATGCCG
ATCATAAATATGCCACGGCATTGGCTGAGGCCGCATTACGAACAGGTGAGAAGAAAATTGCTGACGATGATCTCGAGGCA
AGCCAGTTCACGGAAGAGTGTGGAGAAGCTTTATGTAGTGTTGGTACAAAACCCGCTTGGGAGCGTGCTACCTGTGGAAC
TTCTAAAACTGAGTCATGCATAGATAATAGCAGCGGAACATTAGCAGCAAGAGAAGCTGCAAAATCTCCTCGTTACATTA
TTGAATATATTAGTCAGCAACCTGATGGTTCGGAAATCTACCGTGTAACTGCCAAGGCGTGGGGTAAAAACAGTAACACA
GTTGTGATGTTGCAGTCTTATGTAGAAGCGGAGAAATAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(119-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

46.734

100

0.541