Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   H3L92_RS05045 Genome accession   NZ_CP059570
Coordinates   1065610..1066281 (-) Length   223 a.a.
NCBI ID   WP_085364872.1    Uniprot ID   A0A1X3DGA8
Organism   Neisseria dentiae strain DSM 19151     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1060610..1071281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS05015 (H3L92_05015) - 1061584..1061718 (+) 135 WP_085364877.1 entericidin A/B family lipoprotein -
  H3L92_RS05020 (H3L92_05020) leuD 1061794..1062435 (+) 642 WP_085364876.1 3-isopropylmalate dehydratase small subunit -
  H3L92_RS05025 (H3L92_05025) - 1062876..1063340 (-) 465 WP_085364875.1 PilX family type IV pilin -
  H3L92_RS05030 (H3L92_05030) pilK 1063348..1063866 (-) 519 WP_085364874.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H3L92_RS05035 (H3L92_05035) - 1063842..1064798 (-) 957 WP_245945469.1 PilW family protein -
  H3L92_RS05040 (H3L92_05040) pilV 1064817..1065548 (-) 732 WP_115336314.1 type IV pilus modification protein PilV -
  H3L92_RS05045 (H3L92_05045) pilH 1065610..1066281 (-) 672 WP_085364872.1 GspH/FimT family pseudopilin Machinery gene
  H3L92_RS05050 (H3L92_05050) dnaB 1066552..1067961 (-) 1410 WP_085364871.1 replicative DNA helicase -
  H3L92_RS05055 (H3L92_05055) - 1068146..1068679 (+) 534 WP_085364870.1 inorganic diphosphatase -
  H3L92_RS05060 (H3L92_05060) rpe 1069105..1069788 (-) 684 WP_115336315.1 ribulose-phosphate 3-epimerase -
  H3L92_RS05065 (H3L92_05065) - 1070011..1070439 (+) 429 WP_372338521.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24222.36 Da        Isoelectric Point: 8.7666

>NTDB_id=470826 H3L92_RS05045 WP_085364872.1 1065610..1066281(-) (pilH) [Neisseria dentiae strain DSM 19151]
MRSKYQGFTLTELLIVIAIVAIMAAIAFPNMSQWIASRRAASQAEQVANLLRFARGEAVRLNLPVYVCPAQIKVDGNPDL
YCNTAHAGKGMVAFADTNKDGSYTRNTDIDLRTVILNAQNEERTSYQFNTYNFSGTKQNSNTVWAFYPNGTFGHAAATDG
TFTIGGGFVKIAVTDAAAKDDNTKASRASILLIDSSGRVRKCESGATETIAKLCKYKDEQPSP

Nucleotide


Download         Length: 672 bp        

>NTDB_id=470826 H3L92_RS05045 WP_085364872.1 1065610..1066281(-) (pilH) [Neisseria dentiae strain DSM 19151]
ATGCGTTCAAAATACCAAGGTTTCACCTTAACCGAGCTGTTGATCGTGATTGCTATCGTGGCAATTATGGCCGCAATAGC
CTTTCCCAATATGAGCCAATGGATAGCCTCCCGCCGAGCCGCCAGCCAGGCGGAGCAGGTGGCCAATCTCCTGCGCTTCG
CCCGCGGCGAAGCCGTCCGTTTGAATCTGCCGGTTTATGTTTGCCCCGCACAAATTAAAGTGGACGGCAATCCCGATCTC
TACTGCAACACAGCCCATGCAGGCAAAGGCATGGTGGCATTTGCCGACACCAACAAAGACGGAAGTTATACGCGTAACAC
CGATATTGATTTGCGCACCGTTATTTTGAACGCACAAAACGAAGAGCGCACCAGCTATCAGTTCAATACCTACAACTTCA
GCGGCACAAAACAAAACAGCAATACCGTGTGGGCATTTTACCCTAATGGAACATTCGGCCACGCCGCCGCCACAGACGGC
ACATTCACCATAGGCGGCGGTTTTGTCAAAATTGCCGTTACCGATGCCGCCGCAAAAGACGACAACACCAAAGCATCACG
GGCTTCGATTTTGCTGATAGACAGCAGCGGCAGGGTGCGAAAATGCGAAAGCGGCGCAACAGAAACGATTGCCAAGCTGT
GCAAATATAAAGATGAACAGCCGTCGCCTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-165)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X3DGA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

51.163

96.413

0.493