Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H3L92_RS04605 Genome accession   NZ_CP059570
Coordinates   971721..972530 (-) Length   269 a.a.
NCBI ID   WP_115336308.1    Uniprot ID   -
Organism   Neisseria dentiae strain DSM 19151     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 966721..977530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS04585 (H3L92_04585) - 966735..967292 (+) 558 WP_085365661.1 hypothetical protein -
  H3L92_RS04590 (H3L92_04590) trxB 967485..968432 (+) 948 WP_085365660.1 thioredoxin-disulfide reductase -
  H3L92_RS04595 (H3L92_04595) - 968586..969077 (+) 492 WP_085365659.1 peptidylprolyl isomerase -
  H3L92_RS04600 (H3L92_04600) gatB 969464..970909 (-) 1446 WP_259345794.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  H3L92_RS04605 (H3L92_04605) comL 971721..972530 (-) 810 WP_115336308.1 outer membrane protein assembly factor BamD Machinery gene
  H3L92_RS04610 (H3L92_04610) rluD 972529..973647 (+) 1119 WP_085365656.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H3L92_RS04615 (H3L92_04615) - 973879..975252 (+) 1374 WP_372338525.1 mechanosensitive ion channel family protein -
  H3L92_RS04620 (H3L92_04620) nudB 975253..975705 (+) 453 WP_174222549.1 dihydroneopterin triphosphate diphosphatase -
  H3L92_RS04625 (H3L92_04625) hscB 975788..976288 (+) 501 WP_085365654.1 Fe-S protein assembly co-chaperone HscB -
  H3L92_RS04630 (H3L92_04630) - 976426..977121 (+) 696 WP_085365653.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31172.12 Da        Isoelectric Point: 8.5345

>NTDB_id=470823 H3L92_RS04605 WP_115336308.1 971721..972530(-) (comL) [Neisseria dentiae strain DSM 19151]
MKKILLVVALGLALGGCAGTKGTIDKDAQITQDWTVEKLYAEAHDELNSNNYTRAIKLYEILESRFPNGRYAQQAQLDTA
YAYYKDDEPEKALAAVERFQRNHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVERYPN
SKYAPDATERMAKLVDALGGNEIAVARYYMKRGAYLAAANRAQKIVERYQNTRFVEESLAIMESSYRKMNKTQLADDTRR
ILAQNFPNSPYLQKPWHESTSIPWWRYWR

Nucleotide


Download         Length: 810 bp        

>NTDB_id=470823 H3L92_RS04605 WP_115336308.1 971721..972530(-) (comL) [Neisseria dentiae strain DSM 19151]
ATGAAAAAAATTCTTTTAGTTGTTGCTTTAGGTTTGGCCTTGGGCGGCTGCGCCGGCACCAAAGGCACTATTGATAAAGA
TGCCCAAATCACTCAGGATTGGACGGTTGAAAAACTGTATGCCGAGGCTCACGACGAGTTAAACAGCAATAATTATACGC
GAGCCATCAAGTTATATGAAATTTTGGAATCGCGCTTCCCCAACGGCCGTTATGCCCAGCAGGCGCAGTTAGACACGGCT
TATGCTTATTATAAAGACGACGAGCCGGAAAAAGCGCTGGCTGCCGTCGAGCGTTTCCAACGCAACCACCCCCAGCATCC
GAATATGGATTATGCCTTATATCTCAAAGGCTTGGTGTTGTTTAACGAAGACCAGTCGTTTTTAAACAAATTAGCTTCGC
AAGACTGGTCTGACCGCGATCCGAAAGCCAACCGCGATGCCTACCAAGCGTTTGCCGAGCTGGTGGAACGCTATCCCAAC
AGCAAATACGCGCCCGATGCCACCGAGCGTATGGCGAAACTGGTGGATGCTTTGGGCGGCAACGAAATTGCCGTGGCCCG
TTACTATATGAAGCGCGGCGCGTATTTGGCCGCAGCCAACCGTGCGCAGAAAATCGTCGAGCGTTATCAAAACACCCGCT
TTGTGGAAGAATCGCTGGCGATTATGGAATCTTCTTACCGCAAAATGAACAAAACGCAATTGGCCGACGATACCCGCCGC
ATTTTGGCGCAAAACTTCCCCAACAGCCCTTATCTGCAAAAACCGTGGCATGAAAGCACCAGCATCCCGTGGTGGCGCTA
TTGGCGTTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

79.104

99.628

0.788
  comL Neisseria gonorrhoeae MS11

78.358

99.628

0.781