Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H3L94_RS09195 Genome accession   NZ_CP059567
Coordinates   1882176..1882979 (+) Length   267 a.a.
NCBI ID   WP_182121777.1    Uniprot ID   A0A7D7N4Q3
Organism   Neisseria shayeganii strain DSM 22244     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1877176..1887979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L94_RS09185 (H3L94_09185) - 1879509..1880936 (-) 1428 WP_182121775.1 leucyl aminopeptidase -
  H3L94_RS09190 (H3L94_09190) rluD 1881053..1882177 (-) 1125 WP_182121776.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H3L94_RS09195 (H3L94_09195) comL 1882176..1882979 (+) 804 WP_182121777.1 outer membrane protein assembly factor BamD Machinery gene
  H3L94_RS09200 (H3L94_09200) - 1883078..1883524 (+) 447 WP_182121778.1 DUF4124 domain-containing protein -
  H3L94_RS09205 (H3L94_09205) - 1883967..1884743 (+) 777 WP_182121779.1 ferredoxin--NADP reductase -
  H3L94_RS12620 - 1884909..1885976 (-) 1068 WP_244958743.1 YadA C-terminal domain-containing protein -
  H3L94_RS09215 (H3L94_09215) - 1886304..1886864 (+) 561 WP_244958745.1 DUF1543 domain-containing protein -
  H3L94_RS09220 (H3L94_09220) - 1886921..1887358 (+) 438 WP_182121781.1 META domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31111.94 Da        Isoelectric Point: 7.0613

>NTDB_id=470782 H3L94_RS09195 WP_182121777.1 1882176..1882979(+) (comL) [Neisseria shayeganii strain DSM 22244]
MKKFLLVTGLAVALSACSSTSAVDKEAQATQDWPVERLYAEANDELHSGNYNRAVKLYEILQSRFPNTRYAAQAQLDTTY
AYYKDEQQAQALAHVERFLRLHPHHQNTDYALYLKALILFNEDKSFLNKLASQDWSDRDPKANRDAYHAFNELVTRYPDS
KYAADAREKMTQLVDALGGNEMAIARYYMERGAYLAAANRAQVVISQYQNTRYVEEALAMMIEAYDKLEKPQLRDDTRRV
LAQNFPQSPYLEQAWRPNNIPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=470782 H3L94_RS09195 WP_182121777.1 1882176..1882979(+) (comL) [Neisseria shayeganii strain DSM 22244]
ATGAAAAAATTTCTTTTGGTTACCGGTTTGGCCGTGGCCCTGTCTGCCTGCTCCAGCACCTCCGCAGTAGACAAAGAGGC
GCAGGCCACACAAGATTGGCCGGTGGAACGTCTGTATGCCGAAGCGAACGACGAATTGCACAGCGGCAATTATAACCGCG
CCGTCAAGTTATACGAAATCCTGCAATCGCGCTTCCCCAATACCCGCTACGCCGCCCAAGCCCAGCTCGACACCACCTAC
GCCTACTACAAAGACGAACAGCAGGCTCAGGCCTTGGCCCACGTGGAGCGCTTCCTGCGCCTGCACCCGCACCATCAAAA
CACCGATTACGCCCTCTATCTGAAGGCGCTGATTCTGTTTAACGAAGACAAATCCTTCCTCAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCCAAAGCCAACCGCGATGCCTACCACGCCTTCAACGAACTGGTTACCCGCTATCCCGACAGC
AAATACGCCGCCGACGCCCGCGAGAAAATGACGCAGCTGGTGGACGCCTTGGGCGGCAACGAAATGGCCATCGCCCGCTA
CTATATGGAACGCGGCGCCTACCTGGCAGCAGCCAACCGCGCCCAAGTGGTGATCAGCCAATACCAAAACACCCGCTACG
TAGAAGAAGCGCTAGCCATGATGATCGAGGCTTACGACAAACTGGAAAAACCGCAACTGCGCGACGACACCCGCCGCGTA
CTGGCGCAAAACTTCCCGCAAAGCCCTTATTTGGAACAAGCATGGCGCCCCAACAACATCCCCTGGTGGCGTTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-237)

Prokaryotic membrane lipoprotein lipid attachment site (LPAM_1)

(1-18)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7N4Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

69.549

99.625

0.693
  comL Neisseria gonorrhoeae MS11

69.549

99.625

0.693