Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   H3L94_RS06600 Genome accession   NZ_CP059567
Coordinates   1358163..1360199 (+) Length   678 a.a.
NCBI ID   WP_182121368.1    Uniprot ID   A0A7D7SNM2
Organism   Neisseria shayeganii strain DSM 22244     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1353163..1365199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L94_RS06580 (H3L94_06580) - 1353631..1354173 (+) 543 WP_182121365.1 pilus assembly protein PilP -
  H3L94_RS06585 (H3L94_06585) pilQ 1354193..1356322 (+) 2130 WP_182121366.1 type IV pilus secretin PilQ Machinery gene
  H3L94_RS06590 (H3L94_06590) - 1356360..1356908 (+) 549 WP_182121367.1 shikimate kinase -
  H3L94_RS06595 (H3L94_06595) aroB 1356908..1357984 (+) 1077 WP_182123124.1 3-dehydroquinate synthase -
  H3L94_RS06600 (H3L94_06600) recG 1358163..1360199 (+) 2037 WP_182121368.1 ATP-dependent DNA helicase RecG Machinery gene
  H3L94_RS06605 (H3L94_06605) - 1360238..1360708 (-) 471 WP_182121369.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  H3L94_RS06610 (H3L94_06610) - 1360732..1361241 (-) 510 WP_182121370.1 PilX N-terminal domain-containing pilus assembly protein -
  H3L94_RS06615 (H3L94_06615) - 1361226..1362263 (-) 1038 WP_182121371.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  H3L94_RS06620 (H3L94_06620) pilV 1362266..1362763 (-) 498 WP_182121372.1 type IV pilus modification protein PilV -
  H3L94_RS06625 (H3L94_06625) - 1362811..1363488 (-) 678 WP_182121373.1 GspH/FimT family pseudopilin -
  H3L94_RS06630 (H3L94_06630) dnaB 1363579..1364964 (-) 1386 WP_244958723.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 75653.68 Da        Isoelectric Point: 9.3969

>NTDB_id=470779 H3L94_RS06600 WP_182121368.1 1358163..1360199(+) (recG) [Neisseria shayeganii strain DSM 22244]
MNADLQKQLNITDATVKKLAKLHIHTAWDAVLHLPLRYEDETHLTPIRDAPIGTSCQVEGMVLHQNLQFRPRRQLIVQIR
DASGSVLHLRFLHFYPSQQKQMAVGKTIRAIGEIRHGFFGDEIVHPKIREATHSLAESLTPIYPTVNGLSQSTLRRIIRK
ALEILPLSDTLPENLRTALHLPPLADSLRLLHTPPPEYSPHQLHNRALPAWQRLKFDELLAQQLSMQLARKKRLSGNAIP
LRGNGRLYHCLINSLPFTLTPAQQRVLTEIQNDLSQPHPMHRLLQGDVGSGKTIVAALSALSALEAGAQVAVMAPTEILA
EQHYMKFKQWLEPLGITVSWLSGNLKKKEKDQVKTALADGHVHLAIGTHALFQEDVAFRQLGLVIVDEQHRFGVEQRLAL
KNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIQTRLVNSARRHEVEGLVLAACQKGKQAYWVCPLIEE
SEILQLQTATETQAELQTALPQLKIGLLHGKMKSGEKAAVMGNFASGKIDVLVATTVIEVGVDVPNAVLMVIEHAERMGL
AQLHQLRGRVGRGKDTSSCVLLFSEPLNELAKARLKVIYEHQDGFEIARQDLNIRGPGELLGARQSGVPMLRFASLEEDI
NLLETARQLAPKLIRHDSLTVTDHLSRWLSKREEFLGT

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=470779 H3L94_RS06600 WP_182121368.1 1358163..1360199(+) (recG) [Neisseria shayeganii strain DSM 22244]
ATGAATGCCGATCTGCAAAAGCAACTCAACATCACCGATGCCACAGTAAAAAAACTGGCCAAACTACATATTCACACGGC
TTGGGATGCAGTTTTGCATCTGCCTTTGCGCTACGAAGACGAAACCCACCTGACCCCCATACGAGACGCCCCCATCGGGA
CATCCTGCCAAGTAGAAGGCATGGTGCTGCACCAAAACCTCCAATTCAGGCCGCGCCGACAACTGATCGTGCAGATACGC
GATGCATCCGGGAGCGTACTGCATCTGCGCTTCCTGCATTTCTACCCCAGCCAACAAAAGCAAATGGCAGTAGGCAAAAC
CATCCGCGCCATCGGTGAAATCCGACACGGTTTTTTCGGCGATGAAATAGTGCATCCGAAAATTCGCGAGGCCACACATA
GTCTCGCCGAAAGCCTCACGCCCATCTATCCCACCGTAAACGGTCTCAGTCAATCCACTTTACGCCGCATCATCCGCAAG
GCCCTGGAAATCTTGCCCTTAAGCGACACTCTGCCAGAAAACCTGCGCACTGCATTGCATCTTCCGCCTCTTGCCGACAG
TCTGCGCCTACTCCACACACCACCACCCGAATACAGTCCGCACCAACTTCATAACCGCGCATTGCCTGCTTGGCAACGCC
TCAAATTTGACGAACTATTGGCTCAACAACTTTCCATGCAACTGGCTCGCAAAAAGCGACTTTCCGGCAATGCCATACCG
CTACGCGGAAACGGTCGTCTGTACCACTGTTTAATCAATAGCTTGCCTTTTACCCTGACGCCTGCCCAACAGCGTGTCTT
AACAGAAATTCAAAATGATTTATCCCAGCCTCATCCGATGCACCGCCTATTACAAGGCGATGTTGGCAGCGGCAAAACCA
TTGTGGCAGCACTCTCTGCCCTGAGCGCATTGGAAGCAGGAGCACAAGTTGCCGTCATGGCACCTACCGAAATCTTAGCC
GAGCAGCACTATATGAAATTTAAGCAATGGCTGGAGCCTCTTGGGATAACGGTTTCTTGGCTTTCAGGTAACCTGAAGAA
AAAAGAAAAAGATCAAGTCAAAACTGCTTTGGCAGATGGCCATGTTCATTTGGCCATCGGTACCCATGCCTTATTTCAAG
AAGACGTGGCTTTTCGACAGCTGGGGCTGGTTATCGTGGACGAGCAACACCGCTTCGGGGTCGAACAACGCTTAGCTCTC
AAAAACAAAGGGCGCGACGTCCATCAATTAATGATGTCTGCCACGCCAATACCGCGCACTTTGGCGATGAGTTTTTTTGC
CGACTTGGATGTTTCCGTCATTGACGAACTGCCTCCTGGACGCACCCCCATTCAAACCCGCCTGGTTAACAGCGCCCGAC
GGCATGAAGTGGAAGGCCTCGTTTTAGCTGCCTGCCAAAAAGGGAAACAGGCATATTGGGTCTGCCCGCTGATTGAAGAA
AGTGAAATATTACAATTACAAACTGCCACAGAAACCCAAGCCGAGCTACAAACAGCACTGCCGCAATTAAAAATCGGTTT
GTTGCATGGAAAAATGAAATCTGGAGAAAAGGCGGCAGTAATGGGAAATTTTGCCTCAGGCAAAATAGACGTACTGGTAG
CCACGACTGTCATCGAGGTGGGCGTAGATGTGCCCAATGCCGTTTTAATGGTCATCGAACATGCTGAGCGCATGGGCTTG
GCACAACTTCACCAACTGCGCGGCCGAGTGGGCCGTGGTAAAGACACCAGCAGTTGCGTATTGTTATTCAGCGAACCATT
GAATGAATTAGCCAAAGCCCGGTTAAAAGTGATCTACGAACACCAAGACGGCTTTGAAATCGCCCGTCAAGACTTGAATA
TCCGCGGACCGGGTGAGTTACTGGGCGCCCGACAGAGTGGTGTACCCATGTTGCGTTTTGCAAGCTTGGAAGAAGACATC
AATTTATTAGAAACTGCACGTCAGCTGGCTCCCAAACTTATCCGCCATGACTCCCTAACCGTAACTGACCATTTGTCACG
CTGGCTAAGCAAGCGCGAAGAATTTTTAGGCACATGA

Domains

Predicted by InterproScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(602-660)

Helicase conserved C-terminal domain (Helicase_C)

(465-573)

RecG wedge domain (RecG_wedge)

(14-163)

DEAD/DEAH box helicase (DEAD)

(260-417)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7SNM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

73.49

100

0.736