Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   H3L94_RS00015 Genome accession   NZ_CP059567
Coordinates   4003..7188 (-) Length   1061 a.a.
NCBI ID   WP_182122155.1    Uniprot ID   A0A7D7RMU8
Organism   Neisseria shayeganii strain DSM 22244     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..12188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L94_RS00005 (H3L94_00005) - 35..214 (+) 180 WP_182122153.1 zf-HC2 domain-containing protein -
  H3L94_RS00010 (H3L94_00010) recB 357..3902 (-) 3546 WP_182122154.1 exodeoxyribonuclease V subunit beta Machinery gene
  H3L94_RS00015 (H3L94_00015) recC 4003..7188 (-) 3186 WP_182122155.1 exodeoxyribonuclease V subunit gamma Machinery gene
  H3L94_RS12805 - 7300..7473 (+) 174 Protein_3 lipoprotein signal peptidase -
  H3L94_RS00020 (H3L94_00020) dnaK 7566..9494 (-) 1929 WP_009119251.1 molecular chaperone DnaK -
  H3L94_RS00025 (H3L94_00025) glmU 9781..11139 (-) 1359 WP_182122156.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  H3L94_RS12120 - 11436..11623 (+) 188 Protein_6 ATP-dependent exonuclease -
  H3L94_RS00030 (H3L94_00030) - 11657..11917 (-) 261 WP_182122157.1 hypothetical protein -

Sequence

Protein


Download         Length: 1061 a.a.        Molecular weight: 118254.78 Da        Isoelectric Point: 6.2169

>NTDB_id=470760 H3L94_RS00015 WP_182122155.1 4003..7188(-) (recC) [Neisseria shayeganii strain DSM 22244]
MLLLYQSNRLEILAETAVALMQHAPLQGAFAPEEIVVQSQGMRRYLNHYLAERSGIAANLRFSLPAALSWRLTRTFLPDT
PALNPFAPEVMRWRLLRLLQGDHLPPAVHAALAGYLNSSRTAPYRLAGKLADVFDQYLVYRPDWVAAWENGESMGLGADE
IWQAELWRLLAADGIGGGHRAEQRSRLLAALSADKLPERYLVFGIATLAPMYLDLLQRLAEHTEVHIFAVNPSSRYWGDI
ESARRQALSGLPDAEAAGHPLLASLGKQGRDFFDMLTAEGRVDEQHDWFPAPPAVPSLLQRVQQDIQTLSLPERGSAAMD
GSITIQSAHSRLRELQILKDWLLGVLAEDADLQPHHIAVLTPDIESYAPYIHAVFGEEQPGSPALPYSVADVKISRRPAL
MQLAEQLLALMQSRFETDYVLPLLDSPAVCRHWHFSERDADHLRHSIAELNIRWGSDADMRRRYGGSGEAFTWQQGSERT
ALGWLMPENSGLWQGVLPWTADWSHTAVQARWQQLLACLRRHHALWQTDAAPAEWCARLHALLDDLAGSEPADADDQAAR
QQLHNDLAAWQAESALAGYLKPLPPETACEHLARFFTGSGEAGFLRGGITFCGMVPMRSLPFDTLCLLGLNDSRFPRQTQ
IPAFDLISRHPRKGDRARRDDDRYLFLESLLSARRRLYLSYIGRDSRKDEALAPSPLLSELADVLALMGGQSSAEFAQQH
IRQHPLQPFSPRYFSGSPSSSRQDYAEALNRLPQPPAPFAGDCPPAADCPDPIPLEHLLRFWRNPVRHWLGRALQWREPY
ADEAAESAEPYAIEASNEVARQYLDARRRHQDFADTEAKLAAQGLVPAGLLGHLLQAPDIRAVKRLNGELLHSPRLPAQT
FELACGGRRLTGSLSQLYQHGQILYRSGAPNAPDTVELWLLHLVYCAAGSGSQPRDTHWLSAAAPHTLPPIEREQAQAWL
ASWLDYYALGHSRPLPFFAKTSLAAARAYTEDSDTPPDAAVKAARGDYRSGRFSAGQAERTEVAQVFGRDEAEPIETPLF
WNLVRELLVPLHLYFAAAEAT

Nucleotide


Download         Length: 3186 bp        

>NTDB_id=470760 H3L94_RS00015 WP_182122155.1 4003..7188(-) (recC) [Neisseria shayeganii strain DSM 22244]
ATGCTCCTCCTCTACCAATCCAACCGGCTGGAAATTCTGGCCGAAACCGCCGTGGCCTTGATGCAGCACGCCCCTTTGCA
AGGCGCTTTTGCGCCGGAAGAAATCGTGGTGCAGAGCCAAGGCATGCGCCGCTATCTCAACCATTATCTGGCCGAGCGCA
GCGGCATTGCCGCCAATCTGCGCTTCAGCCTGCCCGCGGCCCTGAGCTGGCGGCTGACCCGCACTTTTCTGCCCGACACC
CCCGCGCTTAATCCGTTTGCCCCCGAAGTAATGCGCTGGCGGCTGTTGCGGCTGTTGCAGGGCGACCATTTGCCGCCGGC
AGTACACGCCGCATTGGCAGGCTACCTGAACAGCAGCCGCACCGCGCCCTACCGCTTGGCCGGCAAACTGGCCGACGTGT
TCGACCAATATCTGGTGTACCGCCCCGATTGGGTGGCGGCTTGGGAAAACGGCGAGAGCATGGGCTTGGGCGCGGATGAA
ATCTGGCAGGCCGAATTGTGGCGCCTACTGGCGGCAGACGGCATCGGCGGCGGCCACCGTGCCGAACAGCGCAGCCGGTT
GCTGGCTGCCCTGTCGGCCGACAAGCTGCCCGAGCGCTATCTGGTATTCGGCATCGCCACGCTGGCGCCGATGTATCTGG
ATTTGCTGCAGCGCCTGGCCGAGCACACCGAGGTGCACATTTTTGCCGTCAACCCGAGCAGCCGTTATTGGGGCGACATC
GAAAGCGCCCGCCGGCAGGCGCTCAGCGGGCTGCCCGATGCCGAGGCCGCCGGCCATCCGCTGTTGGCCTCCTTGGGCAA
ACAGGGGCGCGACTTTTTCGACATGCTCACCGCCGAAGGGCGGGTGGACGAACAGCACGACTGGTTCCCCGCGCCGCCAG
CAGTCCCGTCGCTGCTGCAGCGCGTACAGCAGGACATCCAAACCCTCAGCCTGCCCGAGCGCGGCAGCGCGGCGATGGAC
GGCAGCATCACCATCCAGTCCGCCCACAGCCGCCTGCGCGAATTGCAGATTTTGAAAGACTGGCTCTTGGGCGTGCTGGC
GGAAGATGCCGATTTGCAGCCGCACCACATTGCCGTGCTCACCCCCGACATCGAAAGCTATGCGCCCTACATCCATGCCG
TGTTCGGCGAGGAGCAGCCGGGCAGCCCCGCGCTGCCCTACAGCGTGGCCGACGTCAAAATCAGCCGCCGTCCCGCCCTG
ATGCAGCTGGCCGAGCAGCTGCTGGCGCTGATGCAGAGCCGTTTTGAAACCGATTATGTGCTGCCGCTGCTCGATTCGCC
CGCCGTCTGCCGCCACTGGCATTTTTCCGAGCGCGATGCCGACCACCTGCGCCACAGCATTGCCGAGCTGAACATCCGCT
GGGGCAGCGATGCCGACATGCGCCGCCGCTACGGCGGCAGCGGCGAGGCCTTCACTTGGCAGCAGGGCAGCGAGCGCACA
GCCTTGGGCTGGCTGATGCCGGAAAACAGCGGCCTGTGGCAAGGCGTACTGCCGTGGACGGCCGATTGGTCGCACACCGC
CGTGCAGGCGCGTTGGCAGCAGCTGTTGGCCTGTTTGCGCCGCCATCATGCCCTGTGGCAAACCGATGCCGCGCCGGCCG
AATGGTGCGCACGCCTGCACGCCCTGCTGGATGACCTCGCCGGCAGCGAACCTGCCGATGCCGACGACCAAGCCGCCCGC
CAACAGCTGCACAACGACTTGGCCGCCTGGCAGGCGGAAAGCGCGCTGGCAGGCTACCTGAAACCCCTGCCACCCGAAAC
CGCCTGCGAACATTTGGCCCGCTTCTTCACCGGCAGCGGCGAAGCCGGCTTTTTGCGCGGCGGCATCACCTTCTGCGGCA
TGGTGCCCATGCGCAGCCTGCCGTTCGACACCCTCTGCCTACTCGGTTTGAACGACAGCCGCTTCCCGCGCCAAACCCAG
ATTCCCGCCTTCGACCTCATCAGCCGCCACCCGCGCAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCTGTTTCT
CGAATCCCTGCTCAGCGCCCGCCGCCGGCTGTATCTTTCCTACATCGGCCGCGACAGCCGCAAAGACGAAGCCCTAGCCC
CCTCACCGCTGCTCAGCGAATTGGCCGACGTGCTGGCGCTGATGGGCGGGCAGAGCAGCGCCGAATTTGCCCAACAGCAC
ATCCGCCAACATCCCTTGCAGCCGTTTTCGCCGCGCTATTTTTCAGGTAGCCCGAGCAGCAGCCGGCAAGATTACGCCGA
AGCCCTCAACCGCCTGCCGCAGCCGCCCGCACCGTTTGCCGGCGACTGCCCGCCCGCGGCCGACTGCCCCGATCCCATCC
CCCTTGAGCACCTGCTGCGCTTCTGGCGCAACCCCGTGCGCCATTGGCTCGGCCGCGCCCTGCAATGGCGCGAGCCGTAT
GCCGACGAAGCCGCAGAATCGGCCGAACCCTATGCCATCGAAGCGTCAAACGAAGTCGCCCGCCAATATCTGGACGCCCG
CCGCCGCCATCAGGATTTTGCCGACACCGAAGCCAAGCTCGCCGCCCAAGGCTTGGTGCCCGCCGGCCTGCTCGGCCACC
TGCTGCAGGCGCCCGACATCCGCGCCGTCAAACGGCTGAACGGCGAACTGCTGCACAGCCCGCGCCTGCCGGCACAGACT
TTCGAGCTTGCCTGCGGCGGCCGGCGGCTCACCGGCAGCCTCAGCCAGCTTTACCAACACGGCCAAATCCTCTACCGCAG
CGGCGCGCCTAACGCTCCCGATACGGTGGAACTGTGGCTGCTGCATCTGGTGTATTGCGCCGCCGGCAGCGGCAGCCAGC
CGCGCGACACCCATTGGCTCAGCGCCGCCGCCCCGCACACCCTGCCGCCGATTGAGCGCGAACAGGCGCAGGCGTGGCTG
GCGTCTTGGTTAGATTACTACGCTTTGGGCCACAGCCGCCCGCTGCCTTTTTTTGCCAAAACCTCGCTCGCCGCCGCCCG
CGCCTACACCGAAGACAGCGACACCCCGCCGGATGCCGCCGTCAAAGCCGCCCGCGGCGACTACCGCAGCGGCCGTTTCA
GCGCGGGGCAGGCCGAACGCACCGAAGTGGCGCAGGTATTCGGCCGCGACGAAGCCGAACCGATTGAAACCCCGCTGTTC
TGGAATCTGGTGCGCGAGCTGTTGGTGCCGCTGCATCTTTATTTCGCCGCCGCCGAGGCTACCTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(3-307)

RecC C-terminal domain (RecC_C)

(770-988)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7RMU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

49.577

100

0.497