Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   H3L94_RS00010 Genome accession   NZ_CP059567
Coordinates   357..3902 (-) Length   1181 a.a.
NCBI ID   WP_182122154.1    Uniprot ID   A0A7D7N7K4
Organism   Neisseria shayeganii strain DSM 22244     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..8902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L94_RS00005 (H3L94_00005) - 35..214 (+) 180 WP_182122153.1 zf-HC2 domain-containing protein -
  H3L94_RS00010 (H3L94_00010) recB 357..3902 (-) 3546 WP_182122154.1 exodeoxyribonuclease V subunit beta Machinery gene
  H3L94_RS00015 (H3L94_00015) recC 4003..7188 (-) 3186 WP_182122155.1 exodeoxyribonuclease V subunit gamma Machinery gene
  H3L94_RS12805 - 7300..7473 (+) 174 Protein_3 lipoprotein signal peptidase -

Sequence

Protein


Download         Length: 1181 a.a.        Molecular weight: 129804.20 Da        Isoelectric Point: 5.9382

>NTDB_id=470759 H3L94_RS00010 WP_182122154.1 357..3902(-) (recB) [Neisseria shayeganii strain DSM 22244]
MHAFNPLTVPLLEPQAHLIEASAGTGKTYGIAALFTRLVLQGVPVEQILVVTFTEAATAELKTRLRARLGEAAACLQAEE
GEEAAGDALLQDLLAQASAQHGRDVLAARVQAALSGFDTAAIYTIHGFCLRVLSDYAFLCGVPFELTVGDADPAARLLAA
QDFWREEVADHPLHAELAAEFKLTPASVLAELSPYLKRPFLDAVVPENRLPALLADYEAAWAAVRDALPQLEAGFRRLHP
QLNKRTFNGKTFDTLFTELAQAAESGLHRRSFSKPENLLKFEAGYLKDAVNKGKEIDEAEAAGLAPLAEFGRCFLAIEQA
KAEAVVRLKLACWGYLNRRLAEDKQRRAQRDFDDLLLDVHTALTEGSRAADLAEALAQKWQVALIDEFQDTDPLQYAVFK
TAFIDRGLPVFLVGDPKQAIYGFRGADIHAYLDAAANTPSRYTLATNYRSSRAVVDGIGRLFSRRAAPFVLADIPYVPVA
AHRAQGALQPPGAAVTVRWINPPAGADDKLPSKDVLHARAADFCAREIADRLNRARSGSLLLDGRPLEPQHIAVLVRTHN
EAALAARALKKRGVRSVLLQQESVFDSEEARAFGVMLSFWLHPQHTENLRFLLGSVLYGRTAADLAALNENEAALAGWIA
LAEDARNLWQQQGVYAAAARFARASSLEAHLLATRNERSLTNFWQLAELAAEAAADLPAPAALPEWLARQAGRGIGKERM
LRLESDENLVKIVTMHAAKGLEYPLVFCPFVWDASSRDTAEWALLHQDNGRSLLLARAQLSEAHQEQLFAEAMGERLRLL
YVALTRAREELVLYAAACSSTADNALAYLLAEEDGDCHRIRAGWQALKNQALAEALKQAWHSLISAAPSSDLQWREDEPP
EADYRATDPMQGRYRACTWPPRPWRFIRHTSFTGLTRQAATAEDGLPEQDWLEHQSAAPAGESEAVPETALLAFPRGARA
GVCLHAVLEHTDFNRPAAEQAEAYADILRGYGYDPDSHLAAALEMAAAAAAAELDAGATLADTLPAERLPETGFVLHIEN
FGLPRLQRWFARSDTGLPPHAADHLAALDFHTVNGFLNGFIDLIARSPQGRVWVIDYKSNHLGKRLRDYHPEAMSAAVSE
HHYYLQALIYAVAAARYLKQRRALPDTIAIRYLFLRGLNPHGTEGIWRWDIPTAALAEWLD

Nucleotide


Download         Length: 3546 bp        

>NTDB_id=470759 H3L94_RS00010 WP_182122154.1 357..3902(-) (recB) [Neisseria shayeganii strain DSM 22244]
ATGCACGCTTTCAACCCGCTCACCGTTCCCCTGCTTGAGCCGCAGGCCCATTTGATCGAAGCCTCCGCCGGCACCGGCAA
AACCTACGGCATCGCCGCCCTGTTTACGCGGCTGGTGTTGCAGGGCGTGCCGGTGGAACAGATTTTGGTGGTCACCTTCA
CCGAAGCCGCCACCGCCGAGCTGAAAACCCGTCTGCGCGCCCGTTTGGGTGAGGCGGCGGCCTGCCTGCAAGCAGAGGAG
GGAGAGGAAGCGGCGGGCGATGCCCTGTTGCAGGACTTATTGGCGCAGGCTTCGGCGCAGCACGGCCGCGACGTGCTGGC
CGCCCGCGTGCAGGCGGCCTTGAGCGGTTTCGACACCGCCGCCATCTACACCATCCACGGCTTCTGCCTGCGCGTGCTCA
GCGATTACGCCTTTTTGTGCGGCGTGCCGTTCGAGCTGACGGTGGGCGATGCCGACCCCGCCGCCCGCCTGCTGGCGGCG
CAGGATTTCTGGCGCGAAGAAGTGGCCGACCACCCGCTGCATGCCGAGTTGGCGGCGGAATTCAAACTCACGCCCGCTTC
GGTGTTGGCCGAATTGTCGCCGTATCTGAAGCGCCCTTTTCTCGATGCGGTGGTGCCGGAAAACCGCCTGCCCGCGCTGT
TGGCCGATTACGAAGCTGCGTGGGCGGCGGTGCGCGATGCCCTGCCGCAGTTGGAAGCCGGCTTCCGCCGGCTGCACCCC
CAGCTCAATAAACGCACATTCAACGGCAAAACCTTCGACACCCTGTTTACCGAATTGGCGCAAGCCGCCGAATCGGGCCT
GCACCGGCGCAGTTTCAGCAAGCCCGAAAATCTGCTGAAATTTGAAGCAGGCTACCTGAAAGACGCCGTCAACAAAGGCA
AAGAGATAGACGAGGCCGAAGCCGCCGGCCTCGCCCCGCTGGCCGAATTCGGCCGCTGTTTTCTCGCCATCGAGCAAGCC
AAGGCCGAAGCCGTGGTGCGTCTCAAGTTGGCCTGTTGGGGCTACCTGAACCGCCGCTTGGCCGAAGACAAACAGCGCCG
GGCGCAGCGCGATTTCGACGACCTGCTGCTCGACGTGCACACCGCGCTGACCGAAGGCAGCCGCGCCGCCGATTTGGCCG
AGGCGCTGGCGCAGAAATGGCAGGTGGCGCTGATTGACGAGTTTCAAGACACCGATCCGCTGCAATACGCGGTGTTCAAA
ACCGCCTTTATCGACCGCGGGCTGCCGGTGTTTCTGGTGGGCGACCCCAAACAGGCGATTTACGGCTTCCGCGGGGCGGA
CATCCACGCCTACCTCGATGCCGCCGCCAACACCCCCAGCCGCTACACCCTGGCCACCAACTACCGCAGCAGCCGCGCGG
TGGTGGACGGCATCGGCCGCCTGTTTTCGCGCCGCGCCGCGCCGTTTGTGCTGGCCGATATTCCCTATGTGCCGGTGGCC
GCGCATCGGGCGCAGGGCGCTTTGCAGCCGCCGGGCGCGGCGGTAACGGTGCGCTGGATCAACCCGCCGGCCGGCGCCGA
CGACAAACTGCCGTCCAAAGACGTGCTGCACGCGCGTGCCGCCGATTTCTGCGCCCGCGAAATCGCCGACCGCCTCAACC
GTGCGCGTTCAGGTAGCCTCTTGCTGGACGGCCGGCCACTGGAGCCGCAACACATCGCCGTGTTGGTGCGCACCCACAAC
GAAGCCGCGCTGGCCGCCCGCGCCTTGAAAAAACGCGGCGTGCGCAGCGTGTTGCTGCAGCAGGAATCGGTGTTCGACAG
CGAAGAGGCGCGTGCCTTCGGCGTGATGCTGTCGTTTTGGCTGCACCCGCAGCACACCGAAAACCTGCGCTTTCTGCTCG
GCAGCGTGCTTTACGGCCGCACCGCCGCCGATTTGGCCGCACTCAACGAAAACGAAGCCGCGCTGGCCGGCTGGATCGCG
CTGGCCGAAGACGCGCGCAACCTGTGGCAGCAGCAGGGCGTGTATGCTGCCGCCGCCCGTTTCGCCCGCGCCAGCAGCTT
GGAAGCCCATCTGCTCGCCACCCGCAACGAGCGCAGTCTCACCAACTTCTGGCAGCTGGCCGAACTGGCGGCCGAAGCGG
CCGCCGATCTGCCCGCCCCCGCCGCCCTGCCCGAATGGCTGGCGCGCCAGGCCGGCCGCGGCATCGGCAAAGAGCGGATG
CTGCGTTTGGAAAGCGACGAAAATCTGGTGAAGATTGTCACCATGCACGCGGCCAAAGGCTTGGAGTATCCGCTGGTGTT
CTGCCCCTTTGTGTGGGACGCCAGCAGCCGAGACACCGCCGAGTGGGCGCTGCTGCATCAGGACAACGGCCGCAGCCTGC
TGTTGGCGCGCGCACAATTGAGCGAAGCGCACCAGGAGCAGCTGTTTGCAGAAGCCATGGGCGAACGCCTGCGCCTGCTG
TATGTGGCGCTCACCCGCGCCCGCGAAGAGCTGGTGCTGTATGCAGCCGCCTGCAGCAGCACCGCCGACAACGCGCTGGC
CTACCTCTTGGCCGAAGAAGACGGCGACTGCCACCGCATCCGCGCCGGCTGGCAGGCCTTAAAAAACCAAGCGCTGGCCG
AAGCCTTGAAACAGGCCTGGCACAGCCTGATCAGCGCCGCCCCCAGCAGCGATCTGCAGTGGCGGGAAGACGAGCCGCCC
GAAGCCGACTACCGCGCCACCGACCCGATGCAGGGCCGCTACCGCGCCTGTACCTGGCCGCCGCGCCCGTGGCGCTTTAT
CCGCCACACCAGCTTCACCGGCCTGACCCGCCAAGCCGCCACCGCCGAAGACGGGCTACCTGAACAAGACTGGCTGGAAC
ACCAATCCGCAGCCCCTGCCGGGGAAAGCGAAGCCGTACCCGAAACCGCCCTGTTGGCCTTCCCGCGCGGCGCTCGGGCC
GGCGTGTGCCTGCATGCCGTGTTGGAACACACCGATTTCAACCGCCCCGCCGCCGAACAGGCCGAGGCCTATGCCGATAT
TTTGCGCGGCTACGGCTATGATCCCGACAGCCATCTGGCCGCCGCGCTGGAGATGGCCGCCGCGGCCGCCGCAGCCGAAT
TGGACGCCGGCGCCACGCTGGCCGATACCCTGCCCGCAGAGCGGCTGCCGGAAACCGGCTTTGTGCTGCACATCGAAAAC
TTCGGCCTGCCGCGCCTGCAACGCTGGTTCGCCCGCAGCGATACCGGCCTGCCGCCGCACGCCGCCGACCACCTGGCCGC
CCTCGACTTCCACACCGTCAACGGTTTTCTCAACGGCTTCATCGACCTGATCGCCCGCAGCCCCCAAGGCCGCGTGTGGG
TAATCGACTACAAATCCAACCACTTGGGCAAGCGCTTGCGCGATTATCACCCCGAGGCGATGTCGGCCGCCGTCAGCGAG
CACCATTATTATCTGCAGGCCCTCATTTACGCCGTGGCCGCCGCACGCTACCTGAAACAGCGCCGCGCCCTGCCCGACAC
CATCGCCATCCGCTATCTCTTTCTGCGCGGCCTCAATCCGCACGGAACGGAAGGCATCTGGCGTTGGGACATCCCCACCG
CCGCTTTGGCAGAGTGGTTGGACTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(723-814)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-435)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(960-1156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7N7K4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

48.758

100

0.499